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-rw-r--r--~xihh/blast/PKGBUILD31
-rw-r--r--~xihh/contrafold/PKGBUILD23
-rw-r--r--~xihh/couchapp-git/PKGBUILD40
-rw-r--r--~xihh/couchdb-git/PKGBUILD64
-rw-r--r--~xihh/couchdb-git/couchdb.install22
-rw-r--r--~xihh/couchdb-git/rc-script.patch57
-rw-r--r--~xihh/django-ajax-selects/PKGBUILD53
-rw-r--r--~xihh/gmime24/PKGBUILD35
-rw-r--r--~xihh/libtre/PKGBUILD47
-rw-r--r--~xihh/lyx-clasicthesis/PKGBUILD30
-rw-r--r--~xihh/muscle/LICENSE10
-rw-r--r--~xihh/muscle/PKGBUILD38
-rw-r--r--~xihh/notmuch-address/PKGBUILD58
-rw-r--r--~xihh/python2-argh/PKGBUILD23
-rw-r--r--~xihh/python2-brownie/PKGBUILD23
-rw-r--r--~xihh/python2-http-parser/PKGBUILD30
-rw-r--r--~xihh/python2-pathtools/PKGBUILD41
-rw-r--r--~xihh/python2-restkit/PKGBUILD31
-rw-r--r--~xihh/python2-restkit/doc.patch14
-rw-r--r--~xihh/python2-socketpool/PKGBUILD26
-rw-r--r--~xihh/python2-socketpool/doc.patch14
-rw-r--r--~xihh/python2-watchdog/PKGBUILD25
-rw-r--r--~xihh/retroshare/PKGBUILD140
-rw-r--r--~xihh/retroshare/retroshare.desktop11
-rw-r--r--~xihh/retroshare/retroshare.install15
-rw-r--r--~xihh/retroshare/retroshare.sh1
-rw-r--r--~xihh/ugene/PKGBUILD29
-rw-r--r--~xihh/viennarna/PKGBUILD42
-rw-r--r--~xihh/viennarna/setup.py31
29 files changed, 1004 insertions, 0 deletions
diff --git a/~xihh/blast/PKGBUILD b/~xihh/blast/PKGBUILD
new file mode 100644
index 000000000..70ab81dcc
--- /dev/null
+++ b/~xihh/blast/PKGBUILD
@@ -0,0 +1,31 @@
+# Maintainer: Joshua Haase <hahj87@gmail.com>
+pkgname='blast'
+pkgver=2.2.25
+pkgrel=1
+pkgdesc="Basic Local Alignment Search Tool: BLAST finds regions of similarity between biological sequences"
+arch=('i686' 'x86_64' 'mips64el')
+url="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastHome"
+license=('custom:Public_Domain')
+makedepends=()
+depends=()
+optdepends=()
+source=("ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/$pkgver/ncbi-blast-$pkgver+-src.tar.gz")
+md5sums=('01256b808e3af49a5087945b6a8c8293')
+
+build() {
+ cd "$srcdir/ncbi-blast-${pkgver}+-src/c++"
+ ./configure --prefix=/usr
+ make
+}
+
+check() {
+ cd "$srcdir/ncbi-blast-${pkgver}+-src/c++"
+ make -k check
+}
+
+package() {
+ cd "$srcdir/ncbi-blast-${pkgver}+-src/c++"
+ make DESTDIR="$pkgdir/" install
+}
+
+# vim:set ts=2 sw=2 et:
diff --git a/~xihh/contrafold/PKGBUILD b/~xihh/contrafold/PKGBUILD
new file mode 100644
index 000000000..4cf9c1085
--- /dev/null
+++ b/~xihh/contrafold/PKGBUILD
@@ -0,0 +1,23 @@
+# $Id: pkgbuild-mode.el,v 1.23 2007/10/20 16:02:14 juergen Exp $
+# Maintainer: Joshua Ismael Haase Hernandez <joshpar@stravy>
+pkgname=contrafold
+pkgver=2_02
+pkgrel=1
+epoch=
+pkgdesc="An RNA secondary structure folder."
+arch=('i686' 'x86_64')
+url="http://contra.stanford.edu/contrafold/"
+license=('Custom:BSD3')
+source=(http://contra.stanford.edu/contrafold/contrafold_v${pkgver}.tar.gz)
+md5sums=('cea66c63df835fe7f790c7f49ce83ef3')
+
+build() {
+ cd "$srcdir/$pkgname/src"
+ # ./configure --prefix=/usr
+ make
+}
+
+package() {
+ cd "$srcdir/$pkgname/src"
+ make DESTDIR="$pkgdir/" install
+}
diff --git a/~xihh/couchapp-git/PKGBUILD b/~xihh/couchapp-git/PKGBUILD
new file mode 100644
index 000000000..297426f3f
--- /dev/null
+++ b/~xihh/couchapp-git/PKGBUILD
@@ -0,0 +1,40 @@
+# Contributors: Moritz Heidkamp <moritz@twoticketsplease.de>, Sebastian Sauer <info@dynpages.de>
+pkgname=couchapp-git
+pkgver=20120413
+pkgrel=1
+pkgdesc="A set of helpers and a jQuery plugin that conspire to get you up and running on CouchDB quickly and correctly."
+arch=('any')
+url="http://github.com/couchapp/couchapp/"
+license=('APACHE')
+depends=('python2-restkit' 'python2-watchdog')
+makedepends=('git' 'setuptools')
+provides=(couchapp)
+
+_gitroot="git://github.com/couchapp/couchapp.git"
+_gitname="couchapp"
+
+build() {
+ cd "$srcdir"
+ msg "Connecting to GIT server...."
+
+ if [ -d $_gitname ] ; then
+ cd $_gitname && git pull origin
+ msg "The local files are updated."
+ else
+ git clone "$_gitroot" "$_gitname"
+ fi
+
+ msg "GIT checkout done or server timeout"
+ msg "Starting make..."
+
+ rm -rf "$srcdir/$_gitname-build"
+ git clone "$srcdir/$_gitname" "$srcdir/$_gitname-build"
+
+}
+
+package() {
+
+ cd "$srcdir/$_gitname-build"
+ python2 setup.py install --root="$pkgdir/" --optimize=1
+
+}
diff --git a/~xihh/couchdb-git/PKGBUILD b/~xihh/couchdb-git/PKGBUILD
new file mode 100644
index 000000000..91bb85cbf
--- /dev/null
+++ b/~xihh/couchdb-git/PKGBUILD
@@ -0,0 +1,64 @@
+# $Id: PKGBUILD 61260 2011-12-26 21:33:37Z spupykin $
+# Maintainer: Sergej Pupykin <pupykin.s+arch@gmail.com>
+# Contributor: Vitaliy Berdinskikh ur6lad[at]i.ua
+# Previous Contributor: Michael Fellinger <m.fellinger@gmail.com>
+
+pkgname=couchdb-git
+pkgver=$(date -u +%Y%m%d)
+pkgrel=2
+pkgdesc="A document-oriented database that can be queried and indexed in a MapReduce fashion using JSON"
+arch=('i686' 'x86_64' 'mips64el')
+url="http://couchdb.apache.org"
+license=('APACHE')
+depends=('icu' 'erlang' 'js' 'openssl' 'curl')
+makedepends=('gcc' 'git')
+install=couchdb.install
+options=('!libtool')
+backup=('etc/couchdb/local.ini'
+ 'etc/conf.d/couchdb'
+ 'etc/logrotate.d/couchdb')
+source=("rc-script.patch")
+md5sums=('8a3b1a1ff98a6411827ad991db7a355b')
+
+_gitroot=git://github.com/apache/couchdb.git
+_gitname=couchdb-git
+
+build() {
+ cd "$srcdir"
+ msg "Connecting to GIT server...."
+
+ if [[ -d "$_gitname" ]]; then
+ cd "$_gitname" && git pull origin
+ msg "The local files are updated."
+ else
+ git clone "$_gitroot" "$_gitname"
+ fi
+
+ msg "GIT checkout done or server timeout"
+ msg "Starting build..."
+
+ rm -rf "$srcdir/$_gitname-build"
+ git clone "$srcdir/$_gitname" "$srcdir/$_gitname-build"
+ cd "$srcdir/$_gitname-build"
+
+ #
+ # BUILD HERE
+ #
+
+ [ -x configure ] || ./bootstrap
+ sed -i 's|-ljs|-lmozjs185|' configure
+ [ -f Makefile ] || ./configure --prefix=/usr --sysconfdir=/etc --localstatedir=/var
+ make
+ patch -R etc/init/couchdb <$srcdir/rc-script.patch
+}
+
+package() {
+ cd "$srcdir/$_gitname-build"
+ make DESTDIR="$pkgdir" install
+
+ install -Dm644 etc/default/couchdb $pkgdir/etc/conf.d/couchdb
+ sed -i 's|\(CONFIGURATION_FILE=/etc/\)default\(/couchdb\)|\1conf.d\2|' $pkgdir/etc/rc.d/couchdb
+ sed -i 's|\(COUCHDB_OPTIONS=\)|\1"-p /var/run/couchdb/couchdb.pid"|' $pkgdir/etc/conf.d/couchdb
+
+ rm -rf $pkgdir/etc/default/ $pkgdir/var/run
+}
diff --git a/~xihh/couchdb-git/couchdb.install b/~xihh/couchdb-git/couchdb.install
new file mode 100644
index 000000000..5eff459c7
--- /dev/null
+++ b/~xihh/couchdb-git/couchdb.install
@@ -0,0 +1,22 @@
+post_install() {
+ id couchdb &>/dev/null || \
+ useradd -r -c "CouchDB daemon" -g daemon -d /var/lib/couchdb -s /bin/false couchdb
+ mkdir -p /var/run/couchdb
+ chown -R couchdb.daemon /etc/couchdb
+ chown -R couchdb.daemon /var/{lib,log,run}/couchdb
+}
+
+pre_upgrade() {
+ id couchdb &>/dev/null || \
+ useradd -r -c "CouchDB daemon" -g daemon -d /var/lib/couchdb -s /bin/false couchdb
+}
+
+post_upgrade() {
+ mkdir -p $pkgdir/var/run/couchdb
+ chown -R couchdb.daemon /etc/couchdb
+ chown -R couchdb.daemon /var/{lib,log,run}/couchdb
+}
+
+post_remove() {
+ userdel couchdb &>/dev/null
+}
diff --git a/~xihh/couchdb-git/rc-script.patch b/~xihh/couchdb-git/rc-script.patch
new file mode 100644
index 000000000..1dd723ffc
--- /dev/null
+++ b/~xihh/couchdb-git/rc-script.patch
@@ -0,0 +1,57 @@
+--- couchdb 2011-12-27 01:21:59.000000000 +0400
++++ couchdb.my 2011-12-27 01:21:18.000000000 +0400
+@@ -1,6 +1,4 @@
+-#!/bin/bash
+-. /etc/rc.conf
+-. /etc/rc.d/functions
++#!/bin/sh -e
+
+ # Licensed under the Apache License, Version 2.0 (the "License"); you may not
+ # use this file except in compliance with the License. You may obtain a copy of
+@@ -31,7 +29,7 @@
+ NAME=couchdb
+ SCRIPT_NAME=`basename $0`
+ COUCHDB=/usr/bin/couchdb
+-CONFIGURATION_FILE=/etc/conf.d/couchdb
++CONFIGURATION_FILE=/etc/default/couchdb
+ RUN_DIR=/var/run/couchdb
+ LSB_LIBRARY=/lib/lsb/init-functions
+
+@@ -44,14 +42,16 @@
+ fi
+
+ log_daemon_msg () {
+- stat_busy $@
++ # Dummy function to be replaced by LSB library.
++
++ echo $@
+ }
+
+ log_end_msg () {
++ # Dummy function to be replaced by LSB library.
++
+ if test "$1" != "0"; then
+- stat_fail
+- else
+- stat_done
++ echo "Error with $DESCRIPTION: $NAME"
+ fi
+ return $1
+ }
+@@ -66,7 +66,7 @@
+ command="$command $COUCHDB_OPTIONS"
+ fi
+ if test -n "$COUCHDB_USER"; then
+- if su $COUCHDB_USER -s /bin/bash -c "$command"; then
++ if su $COUCHDB_USER -c "$command"; then
+ return $SCRIPT_OK
+ else
+ return $SCRIPT_ERROR
+@@ -84,7 +84,6 @@
+ # Start Apache CouchDB as a background process.
+
+ mkdir -p "$RUN_DIR"
+- chown -R $COUCHDB_USER "$RUN_DIR"
+ command="$COUCHDB -b"
+ if test -n "$COUCHDB_STDOUT_FILE"; then
+ command="$command -o $COUCHDB_STDOUT_FILE"
diff --git a/~xihh/django-ajax-selects/PKGBUILD b/~xihh/django-ajax-selects/PKGBUILD
new file mode 100644
index 000000000..e0255e745
--- /dev/null
+++ b/~xihh/django-ajax-selects/PKGBUILD
@@ -0,0 +1,53 @@
+# $Id: pkgbuild-mode.el,v 1.23 2007/10/20 16:02:14 juergen Exp $
+# Maintainer: Joshua Ismael Haase Hernandez <joshpar@none>
+pkgname=django-ajax-selects
+pkgver=20120215
+pkgrel=1
+epoch=
+pkgdesc=""
+arch=('i686' 'x86_64' 'mips64el')
+url="https://github.com/crucialfelix/django-ajax-selects"
+license=('GPL')
+groups=()
+depends=('python2')
+makedepends=('git')
+checkdepends=()
+optdepends=()
+provides=()
+conflicts=()
+replaces=()
+backup=()
+options=(!emptydirs)
+install=
+changelog=
+source=()
+md5sums=()
+noextract=()
+#generate with 'makepkg -g'
+
+_gitroot=git://github.com/crucialfelix/django-ajax-selects.git
+_gitname=django-ajax-selects
+
+build() {
+ cd "$srcdir"
+ msg "Connecting to GIT server...."
+
+ if [[ -d "$_gitname" ]]; then
+ cd "$_gitname" && git pull origin
+ msg "The local files are updated."
+ else
+ git clone "$_gitroot" "$_gitname"
+ fi
+
+ msg "GIT checkout done or server timeout"
+ msg "Starting build..."
+
+ rm -rf "$srcdir/$_gitname-build"
+ git clone "$srcdir/$_gitname" "$srcdir/$_gitname-build"
+ cd "$srcdir/$_gitname-build"
+}
+
+package() {
+ cd "$srcdir/$_gitname-build"
+ python setup.py install --root="$pkgdir/" --optimize=1
+}
diff --git a/~xihh/gmime24/PKGBUILD b/~xihh/gmime24/PKGBUILD
new file mode 100644
index 000000000..d50f71c4d
--- /dev/null
+++ b/~xihh/gmime24/PKGBUILD
@@ -0,0 +1,35 @@
+# $Id: PKGBUILD 150770 2012-02-21 20:45:23Z ibiru $
+# Maintainer: Jan de Groot <jgc@archlinux.org>
+# Contributor: Ben <ben@benmazer.net>
+
+_pkgbase=gmime
+pkgname=gmime24
+pkgver=2.4.32
+pkgrel=1
+pkgdesc="Core mime parsing library"
+arch=('i686' 'x86_64' 'mips64el')
+license=('GPL')
+url="http://spruce.sourceforge.net/gmime/"
+depends=('glib2' 'gpgme' 'zlib')
+makedepends=('gtk-sharp-2' 'pkgconfig')
+[ "$CARCH" = "mips64el" ] && unset makedepends
+options=('!libtool')
+source=(http://ftp.gnome.org/pub/GNOME/sources/$_pkgbase/${pkgver%.*}/$_pkgbase-$pkgver.tar.xz)
+sha256sums=('a0e8f3a1949e7281e92edc5dd6309a7ca34b6838c6acf7b7f1563a41b5ddd74b')
+
+build() {
+ # get rid of that .wapi errors in fakeroot
+ export MONO_SHARED_DIR="$srcdir/weird"
+ mkdir -p "$MONO_SHARED_DIR"
+
+ cd "$srcdir/$_pkgbase-$pkgver"
+
+ ./configure --prefix=/usr --enable-smime \
+ --disable-static
+ make
+}
+
+package() {
+ cd "$srcdir/$_pkgbase-$pkgver"
+ make DESTDIR="$pkgdir" install
+}
diff --git a/~xihh/libtre/PKGBUILD b/~xihh/libtre/PKGBUILD
new file mode 100644
index 000000000..ad111c45d
--- /dev/null
+++ b/~xihh/libtre/PKGBUILD
@@ -0,0 +1,47 @@
+# $Id: pkgbuild-mode.el,v 1.23 2007/10/20 16:02:14 juergen Exp $
+# Maintainer: Joshua Ismael Haase Hernandez <joshpar@stravy>
+pkgbase='libtre'
+pkgname=('libtre' 'python2-tre')
+pkgver=0.8.0
+pkgrel=1
+pkgdesc="The free and portable approximate regex matching library."
+arch=('i686' 'x86_64' 'mips64el')
+url="http://laurikari.net/tre/download/"
+license=('custom:BSD2')
+groups=()
+depends=()
+makedepends=('python' 'python2')
+checkdepends=()
+optdepends=()
+provides=()
+conflicts=()
+replaces=()
+backup=()
+options=()
+install=
+changelog=
+source=("http://laurikari.net/tre/tre-${pkgver}.tar.bz2")
+md5sums=('b4d3232593dadf6746f4727bdda20b41')
+noextract=()
+
+build() {
+ cd "$srcdir/tre-$pkgver"
+ ./configure --prefix=/usr
+ make
+}
+
+check() {
+ cd "$srcdir/tre-$pkgver"
+ make -k check || true # some errors expected
+}
+
+package_libtre() {
+ cd "$srcdir/tre-$pkgver"
+ make DESTDIR="$pkgdir/" install
+}
+
+package_python2-tre() {
+ depends=('libtre')
+ cd "$srcdir/tre-$pkgver/python"
+ python2 setup.py install --root="$pkgdir/" --optimize=1
+}
diff --git a/~xihh/lyx-clasicthesis/PKGBUILD b/~xihh/lyx-clasicthesis/PKGBUILD
new file mode 100644
index 000000000..8e63e2025
--- /dev/null
+++ b/~xihh/lyx-clasicthesis/PKGBUILD
@@ -0,0 +1,30 @@
+# $Id: pkgbuild-mode.el,v 1.23 2007/10/20 16:02:14 juergen Exp $
+# Maintainer: Joshua Ismael Haase Hernandez <joshpar@stravy>
+pkgname=lyx-clasicthesis
+pkgver=3.1-beta1
+pkgrel=1
+pkgdesc="A Classic Thesis Style for LaTeX and LyX"
+arch=('any')
+url="https://code.google.com/p/classicthesis/"
+license=('GPL')
+groups=()
+depends=('lyx')
+source=(https://code.google.com/p/classicthesis/downloads/detail?name=ClassicThesis-LyX-v${pkgver}.zip)
+md5sums=('a437079a70466adadf8f7034e02ebd85')
+noextract=()
+
+build() {
+ cd "$srcdir/$pkgname-$pkgver"
+ ./configure --prefix=/usr
+ make
+}
+
+check() {
+ cd "$srcdir/$pkgname-$pkgver"
+ make -k check
+}
+
+package() {
+ cd "$srcdir/$pkgname-$pkgver"
+ make DESTDIR="$pkgdir/" install
+}
diff --git a/~xihh/muscle/LICENSE b/~xihh/muscle/LICENSE
new file mode 100644
index 000000000..e48f525fe
--- /dev/null
+++ b/~xihh/muscle/LICENSE
@@ -0,0 +1,10 @@
+MUSCLE is public domain software
+
+The MUSCLE software, including object and source code and
+documentation, is hereby donated to the public domain.
+
+Disclaimer of warranty
+
+THIS SOFTWARE IS PROVIDED "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER
+EXPRESS OR IMPLIED, INCLUDING WITHOUT LIMITATION IMPLIED WARRANTIES OF
+MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.
diff --git a/~xihh/muscle/PKGBUILD b/~xihh/muscle/PKGBUILD
new file mode 100644
index 000000000..101e2e312
--- /dev/null
+++ b/~xihh/muscle/PKGBUILD
@@ -0,0 +1,38 @@
+# $Id: pkgbuild-mode.el,v 1.23 2007/10/20 16:02:14 juergen Exp $
+# Maintainer: Joshua Ismael Haase Hernandez <joshpar@stravy>
+pkgname=muscle
+pkgver=3.8.31
+pkgrel=1
+epoch=
+pkgdesc="multiple sequence comparison by log-expectation"
+arch=('i686' 'x86_64' 'mips64el')
+url="http://www.drive5.com/muscle/"
+license=('custom:PublicDomain')
+groups=()
+depends=()
+makedepends=('gcc-libs')
+checkdepends=()
+optdepends=()
+provides=()
+conflicts=()
+replaces=()
+backup=()
+options=()
+install=
+changelog=
+source=(http://www.drive5.com/muscle/downloads${pkgver}/muscle${pkgver}_src.tar.gz LICENSE)
+md5sums=('f767f00fd15f0c5db944d41936779e10'
+ '57cfb6975987af93c89977f084d53b72')
+noextract=()
+
+build() {
+ cd "$srcdir/$pkgname$pkgver/src"
+ sed -i 's/ -msse2 -mfpmath=sse//' mk
+ make
+}
+
+package() {
+ cd "$srcdir/$pkgname$pkgver/src"
+ install -D -m755 muscle "$pkgdir/usr/bin/muscle"
+ install -D -m644 "$srcdir/LICENSE" "$pkgdir/usr/share/licenses/$pkgname/LICENSE"
+}
diff --git a/~xihh/notmuch-address/PKGBUILD b/~xihh/notmuch-address/PKGBUILD
new file mode 100644
index 000000000..908f40b22
--- /dev/null
+++ b/~xihh/notmuch-address/PKGBUILD
@@ -0,0 +1,58 @@
+# $Id: pkgbuild-mode.el,v 1.23 2007/10/20 16:02:14 juergen Exp $
+# Maintainer: Joshua Ismael Haase Hernandez <joshpar@stravy>
+pkgname=notmuch-address
+pkgver=20120201
+pkgrel=1
+epoch=
+pkgdesc="Address completion for notmuch"
+arch=('any')
+url=""
+license=('GPL')
+groups=()
+depends=(python2)
+makedepends=(git)
+checkdepends=()
+optdepends=()
+provides=()
+conflicts=()
+replaces=()
+backup=()
+options=()
+install=
+changelog=
+source=()
+md5sums=()
+noextract=()
+#generate with 'makepkg -g'
+_gitroot=http://commonmeasure.org/~jkr/git/notmuch_addresses.git
+_gitname=notmuch-adress
+
+build() {
+ cd "$srcdir"
+ msg "Connecting to GIT server...."
+
+ if [[ -d "$_gitname" ]]; then
+ cd "$_gitname" && git pull origin
+ msg "The local files are updated."
+ else
+ git clone "$_gitroot" "$_gitname"
+ fi
+
+ msg "GIT checkout done or server timeout"
+ msg "Starting build..."
+
+ rm -rf "$srcdir/$_gitname-build"
+ git clone "$srcdir/$_gitname" "$srcdir/$_gitname-build"
+ cd "$srcdir/$_gitname-build"
+
+ #
+ # BUILD HERE
+ #
+}
+
+package() {
+ cd "$srcdir/$_gitname-build"
+ sed -i "s_#!/usr/bin/env python_#!/usr/bin/env python2_" notmuch_addresses.py
+ install -d $pkgdir/usr/bin
+ install -m755 notmuch_addresses.py $pkgdir/usr/bin/notmuch_addresses.py
+} \ No newline at end of file
diff --git a/~xihh/python2-argh/PKGBUILD b/~xihh/python2-argh/PKGBUILD
new file mode 100644
index 000000000..7805d47be
--- /dev/null
+++ b/~xihh/python2-argh/PKGBUILD
@@ -0,0 +1,23 @@
+# Maintainer: Andrey Mikhaylenko <neithere at gmail dot com>
+# Contributor: Fabien Devaux <fdev31 at gmail dot com>
+pkgname=python2-argh
+pkgver=0.15.1
+pkgrel=1
+pkgdesc="A simple argparse wrapper"
+arch=('any')
+url="http://bitbucket.org/neithere/argh/"
+license=('LGPL3')
+depends=('python2')
+makedepends=('python2-distribute')
+conflicts=()
+replaces=()
+backup=()
+options=(!emptydirs)
+install=
+source=(http://pypi.python.org/packages/source/a/argh/argh-${pkgver}.tar.gz)
+md5sums=('64d92b85819df18b817f7e076bd4ed3b')
+
+package() {
+ cd "${srcdir}/argh-${pkgver}"
+ python2 setup.py install --root="${pkgdir}" --optimize=1
+}
diff --git a/~xihh/python2-brownie/PKGBUILD b/~xihh/python2-brownie/PKGBUILD
new file mode 100644
index 000000000..85f77baf8
--- /dev/null
+++ b/~xihh/python2-brownie/PKGBUILD
@@ -0,0 +1,23 @@
+pkgname=python2-brownie
+pkgver=0.5.1
+pkgrel=1
+pkgdesc="Python Utility Library from Pocoo."
+url="http://packages.python.org/Brownie"
+depends=('python2')
+makedepends=('python2-distribute')
+license=('custom:BSD')
+arch=('i686' 'x86_64' 'mips64el')
+source=("http://pypi.python.org/packages/source/B/Brownie/Brownie-$pkgver.tar.gz")
+md5sums=('c79089d747777f4754656b41998e5685')
+
+build() {
+ cd $srcdir/Brownie-$pkgver
+ python2 setup.py build
+}
+
+package() {
+ cd $srcdir/Brownie-$pkgver
+ python2 setup.py install --root="$pkgdir" --optimize=1
+
+ install -m644 -D LICENSE.rst "$pkgdir/usr/share/licenses/$pkgname/LICENSE.rst"
+}
diff --git a/~xihh/python2-http-parser/PKGBUILD b/~xihh/python2-http-parser/PKGBUILD
new file mode 100644
index 000000000..697e30aa1
--- /dev/null
+++ b/~xihh/python2-http-parser/PKGBUILD
@@ -0,0 +1,30 @@
+# Maintainer: Baptiste Jonglez <baptiste--aur at jonglez dot org>
+pkgname='python2-http-parser'
+pkgver=0.7.3
+pkgrel=1
+pkgdesc="HTTP request/response parser for Python."
+arch=('i686' 'x86_64' 'mips64el')
+url="https://github.com/benoitc/http-parser"
+license=('custom:MIT')
+makedepends=('python2-distribute')
+options=(!emptydirs)
+source=("http://pypi.python.org/packages/source/h/http-parser/http-parser-${pkgver}.tar.gz")
+md5sums=('0adf47b79905e31c1f53414ab279987e')
+
+build() {
+ cd "$srcdir/http-parser-$pkgver"
+
+ python2 setup.py build
+
+}
+
+package() {
+
+ depends=('python2')
+
+ cd "$srcdir/http-parser-$pkgver"
+ python2 setup.py install --prefix=/usr --root=$pkgdir/ --optimize=1
+
+ install -m755 -d "${pkgdir}/usr/share/licenses/python2-python-http-parser"
+ install -m644 LICENSE "${pkgdir}/usr/share/licenses/python2-python-http-parser/"
+}
diff --git a/~xihh/python2-pathtools/PKGBUILD b/~xihh/python2-pathtools/PKGBUILD
new file mode 100644
index 000000000..ea1bddc28
--- /dev/null
+++ b/~xihh/python2-pathtools/PKGBUILD
@@ -0,0 +1,41 @@
+# Maintainer: Joshua Haase <hahj87@gmail.com>
+
+pkgname=python2-pathtools
+pkgver=$(date -u +%Y%m%d)
+pkgrel=1
+pkgdesc="Pattern matching and various utilities for file systems paths."
+arch=('any')
+url="https://github.com/gorakhargosh/pathtools"
+license=('custom:MIT')
+depends=('python2')
+makedepends=('git')
+options=(!emptydirs)
+
+_gitroot="git://github.com/gorakhargosh/pathtools.git"
+_gitname="pathtools"
+
+build() {
+ cd "$srcdir"
+ msg "Connecting to GIT server...."
+
+ if [ -d "$_gitname" ] ; then
+ cd "$_gitname" && git pull origin
+ msg "The local files are updated."
+ else
+ git clone "$_gitroot" "$_gitname"
+ fi
+
+ msg "GIT checkout done or server timeout"
+ msg "Starting make..."
+
+ rm -rf "$srcdir/${_gitname}-build"
+ git clone "$srcdir/${_gitname}" "$srcdir/${_gitname}-build"
+
+}
+
+package() {
+ cd "$srcdir/${_gitname}-build"
+ python2 setup.py install --root="$pkgdir/" --optimize=1
+
+ install -m 644 -D LICENSE "$pkgdir/usr/share/licenses/$pkgname"
+}
diff --git a/~xihh/python2-restkit/PKGBUILD b/~xihh/python2-restkit/PKGBUILD
new file mode 100644
index 000000000..244ff1f17
--- /dev/null
+++ b/~xihh/python2-restkit/PKGBUILD
@@ -0,0 +1,31 @@
+# Maintainer: Baptiste Jonglez <baptiste--aur at jonglez dot org>
+pkgname=python2-restkit
+pkgver=4.0.0
+pkgrel=1
+pkgdesc="Restkit is an HTTP resource kit for Python. It allows you to easily access to HTTP resource and build objects around it."
+arch=('any')
+url="http://benoitc.github.com/restkit/index.html"
+license=('MIT')
+depends=('python2-http-parser' 'python2-socketpool')
+makedepends=('python2-distribute')
+provides=()
+options=(!emptydirs)
+source=("http://pypi.python.org/packages/source/r/restkit/restkit-$pkgver.tar.gz"
+ "doc.patch")
+md5sums=('1bb0fa0115f82803472a2a6a8a30cf30'
+ '87fa9d990c28e3f328b31e322343b157')
+
+package() {
+ cd "$srcdir/restkit-$pkgver"
+
+ # Install doc at the proper location
+ patch -p1 < "$srcdir/doc.patch"
+
+ # Remove tests directory (conflicts with other python packages)
+ rm -rf tests
+
+ python2 setup.py install --prefix=/usr --root=$pkgdir/ --optimize=1
+
+}
+
+# vim:set ts=2 sw=2 et:
diff --git a/~xihh/python2-restkit/doc.patch b/~xihh/python2-restkit/doc.patch
new file mode 100644
index 000000000..f8e5a99d9
--- /dev/null
+++ b/~xihh/python2-restkit/doc.patch
@@ -0,0 +1,14 @@
+diff -ru restkit-4.0.0/setup.py restkit-4.0.0.new/setup.py
+--- restkit-4.0.0/setup.py 2012-01-25 03:47:45.000000000 +0100
++++ restkit-4.0.0.new/setup.py 2012-01-26 21:17:10.211046123 +0100
+@@ -39,8 +39,8 @@
+ long_description = f.read()
+
+ DATA_FILES = [
+- ('restkit', ["LICENSE", "MANIFEST.in", "NOTICE", "README.rst",
+- "THANKS", "TODO.txt"])
++ ('share/doc/restkit', ["LICENSE", "MANIFEST.in", "NOTICE",
++ "README.rst", "THANKS", "TODO.txt"])
+ ]
+
+ options=dict(
diff --git a/~xihh/python2-socketpool/PKGBUILD b/~xihh/python2-socketpool/PKGBUILD
new file mode 100644
index 000000000..9c853efea
--- /dev/null
+++ b/~xihh/python2-socketpool/PKGBUILD
@@ -0,0 +1,26 @@
+# Maintainer: Baptiste Jonglez <baptiste--aur at jonglez dot org>
+pkgname=python2-socketpool
+pkgver=0.2.3
+pkgrel=1
+pkgdesc="Socket pool is a simple socket pool that suports multiple factories and backends. It can easily be used by gevent, eventlet or any other library."
+arch=('any')
+url="https://github.com/benoitc/socketpool"
+license=('MIT')
+depends=('python2')
+makedepends=('python2-distribute')
+options=(!emptydirs)
+source=("http://pypi.python.org/packages/source/s/socketpool/socketpool-$pkgver.tar.gz"
+ "doc.patch")
+md5sums=('aa7829958eb5df7f69f43c2946b17956'
+ 'b647167a37276f6dce2b9dc427a46dcc')
+
+package() {
+ cd "$srcdir/socketpool-$pkgver"
+
+ # Install doc at the proper location
+ patch -p1 < "$srcdir/doc.patch"
+
+ python2 setup.py install --prefix=/usr --root=$pkgdir/ --optimize=1
+}
+
+# vim:set ts=2 sw=2 et:
diff --git a/~xihh/python2-socketpool/doc.patch b/~xihh/python2-socketpool/doc.patch
new file mode 100644
index 000000000..19ae3cd58
--- /dev/null
+++ b/~xihh/python2-socketpool/doc.patch
@@ -0,0 +1,14 @@
+diff -ru socketpool-0.2.3.old/setup.py socketpool-0.2.3/setup.py
+--- socketpool-0.2.3.old/setup.py 2012-01-26 21:57:45.947850603 +0100
++++ socketpool-0.2.3/setup.py 2012-01-26 21:58:04.771081964 +0100
+@@ -23,8 +23,8 @@
+ long_description = f.read()
+
+ DATA_FILES = [
+- ('socketpool', ["LICENSE", "MANIFEST.in", "NOTICE", "README.rst",
+- "THANKS", "UNLICENSE"])
++ ('share/doc/socketpool', ["LICENSE", "MANIFEST.in", "NOTICE",
++ "README.rst", "THANKS", "UNLICENSE"])
+ ]
+
+
diff --git a/~xihh/python2-watchdog/PKGBUILD b/~xihh/python2-watchdog/PKGBUILD
new file mode 100644
index 000000000..15bc2f4a3
--- /dev/null
+++ b/~xihh/python2-watchdog/PKGBUILD
@@ -0,0 +1,25 @@
+# Maintainer: Joshua Haase <hahj87@gmail.com>
+pkgname=python2-watchdog
+pkgver=0.6.0
+pkgrel=1
+pkgdesc="Python API library and shell utilities to monitor file system events."
+arch=('any')
+url="http://packages.python.org/watchdog/"
+license=('Apache')
+groups=()
+depends=('python2-pathtools' 'python2-argh' 'python2-yaml' 'python2-brownie')
+makedepends=('python2-distribute')
+provides=()
+conflicts=()
+replaces=()
+backup=()
+options=(!emptydirs)
+install=
+source=(http://pypi.python.org/packages/source/w/watchdog/watchdog-$pkgver.tar.gz)
+md5sums=('6e8fb84aa6bdeb2054906bdf40048eba')
+
+package() {
+ cd "$srcdir/watchdog-$pkgver"
+ python2 setup.py install --root="$pkgdir/" --optimize=1
+
+}
diff --git a/~xihh/retroshare/PKGBUILD b/~xihh/retroshare/PKGBUILD
new file mode 100644
index 000000000..7c62e2254
--- /dev/null
+++ b/~xihh/retroshare/PKGBUILD
@@ -0,0 +1,140 @@
+# Maintainer: stqn
+# Contributor: JHeaton <jheaton at archlinux dot us>
+# Contributor: Tristero <tristero at online dot de>
+# Contributor: funkyou
+
+pkgname=retroshare
+pkgver=0.5.3b
+pkgrel=5
+pkgdesc="Serverless encrypted instant messenger with filesharing, chatgroups, e-mail."
+arch=('i686' 'x86_64' 'mips64el')
+url="http://retroshare.sourceforge.net/"
+license=('LGPL' 'GPL')
+depends=('qt' 'libupnp' 'gpgme' 'libgnome-keyring' 'libxss')
+install="${pkgname}.install"
+
+source=(http://sourceforge.net/projects/retroshare/files/RetroShare/${pkgver}/RetroShare-v${pkgver}.tar.gz \
+ ${pkgname}.sh \
+ ${pkgname}.install \
+ ${pkgname}.desktop)
+
+sha256sums=('bd602a8a144597381659191561c19aaf9993eab0e0955cba8e6923b7efa30b0e'
+ '79d390eecea24ac51caa869fa8e0813abae092c75873527e180e0c965dac6f8e'
+ '5ba8c11c312b232b1935ee0918d020b049e4993cd8701e0446af4f8f637f4dce'
+ '70be00968f2477e368f75393f193e76f366fff2dadab869c855e92048060cf29')
+
+# Setting this to TRUE activates the compilation and packaging
+# of the plugins which are not yet officially released.
+# NOTE: doesn't work at the moment.
+_USE_PLUGINS=FALSE
+
+# Setting this to TRUE activates the compilation and packaging
+# of retroshare-nogui
+_USE_NOGUI=FALSE
+
+build() {
+ cd ${srcdir}
+
+ msg "Compiling libbitdht..."
+ cd ${srcdir}/trunk/libbitdht/src
+ qmake
+ make
+
+ msg "Compiling libretroshare..."
+ cd ${srcdir}/trunk/libretroshare/src
+ qmake
+ make
+
+ if [ "x$_USE_PLUGINS" == "xTRUE" ] ; then
+ msg "Compiling retroshare plugins..."
+ cd ${srcdir}/trunk/plugins
+ qmake
+ make
+ fi
+
+ msg "Compiling retroshare-gui..."
+ cd ${srcdir}/trunk/retroshare-gui/src
+ # Add missing libs
+ sed -i "s/-lssl -lgpgme -lupnp -lixml -lXss -lgnome-keyring/-lssl -lcrypto -ldl -lX11 -lgpgme -lupnp -lixml -lXss -lgnome-keyring/" RetroShare.pro
+ qmake
+ make
+
+ if [ "x$_USE_NOGUI" == "xTRUE" ] ; then
+ msg "Compiling retroshare-nogui..."
+ cd ${srcdir}/trunk/retroshare-nogui/src
+ # Add missing libs
+ sed -i "s/-lssl -lgpgme -lupnp -lixml -lgnome-keyring/-lssl -lcrypto -ldl -lgpgme -lupnp -lixml -lgnome-keyring/" retroshare-nogui.pro
+ qmake
+ make
+ fi
+}
+
+package() {
+
+ # --- Install Files ---
+
+ msg "Install files to fakeroot-environment"
+
+ # - Binaries
+ # Not installing the static libraries since there's no SDK anyway
+ #install -D -m 644 \
+ # "${srcdir}/trunk/libbitdht/src/lib/libbitdht.a" \
+ # "${pkgdir}/usr/lib/libbitdht.a"
+ #install -D -m 644 \
+ # "${srcdir}/trunk/libretroshare/src/lib/libretroshare.a" \
+ # "${pkgdir}/usr/lib/libretroshare.a"
+
+ install -D -m 755 \
+ "${srcdir}/trunk/retroshare-gui/src/RetroShare" \
+ "${pkgdir}/opt/${pkgname}/${pkgname}"
+
+ install -D -m 755 \
+ "${pkgname}.sh" \
+ "${pkgdir}/usr/bin/${pkgname}"
+
+ if [ "x$_USE_NOGUI" == "xTRUE" ] ; then
+ install -D -m 755 \
+ "${srcdir}/trunk/retroshare-nogui/src/retroshare-nogui" \
+ "${pkgdir}/usr/bin/${pkgname}-nogui"
+ fi
+
+ # plugins
+
+ if [ "x$_USE_PLUGINS" == "xTRUE" ] ; then
+ # missing : LinksCloud
+ install -D -m 755 \
+ "${srcdir}/trunk/plugins/bin/libcalendar_plugin.so" \
+ "${pkgdir}/usr/lib/retroshare/plugins/libcalendar_plugin.so"
+ install -D -m 755 \
+ "${srcdir}/trunk/plugins/bin/libpuzzle_plugin.so" \
+ "${pkgdir}/usr/lib/retroshare/plugins/libpuzzle_plugin.so"
+ install -D -m 755 \
+ "${srcdir}/trunk/plugins/bin/libqcheckers_plugin.so" \
+ "${pkgdir}/usr/lib/retroshare/plugins/libqcheckers_plugin.so"
+ install -D -m 755 \
+ "${srcdir}/trunk/plugins/bin/libqdiagram_plugin.so" \
+ "${pkgdir}/usr/lib/retroshare/plugins/libqdiagram_plugin.so"
+ fi
+
+ # Style sheets
+ cp -r "${srcdir}/trunk/retroshare-gui/src/qss" "$pkgdir/opt/retroshare/"
+ chmod 755 "$pkgdir/opt/retroshare/qss"
+
+ # Icons
+ #install -D -m 644 \
+ # "${srcdir}/trunk/retroshare-gui/src/gui/images/retrosharelogo1.png" \
+ # "${pkgdir}/usr/share/pixmaps/retroshare_blue.png"
+ install -D -m 644 \
+ "${srcdir}/trunk/retroshare-gui/src/gui/images/retrosharelogo2.png" \
+ "${pkgdir}/usr/share/pixmaps/retroshare.png"
+
+ # Desktop File
+ install -D -m 644 \
+ "${srcdir}/${pkgname}.desktop" \
+ "${pkgdir}/usr/share/applications/${pkgname}.desktop"
+
+ # bdboot (needed to bootstrap the DHT)
+ install -D -m 644 \
+ "${srcdir}/trunk/libbitdht/src/bitdht/bdboot.txt" \
+ "${pkgdir}/usr/share/RetroShare/bdboot.txt"
+}
diff --git a/~xihh/retroshare/retroshare.desktop b/~xihh/retroshare/retroshare.desktop
new file mode 100644
index 000000000..0c3f56180
--- /dev/null
+++ b/~xihh/retroshare/retroshare.desktop
@@ -0,0 +1,11 @@
+[Desktop Entry]
+Version=1.0
+Type=Application
+Name=RetroShare
+GenericName=Sharing Network
+Comment=Secure Communication with Your Friends
+Icon=/usr/share/pixmaps/retroshare.png
+Exec=/usr/bin/retroshare
+Terminal=false
+StartupNotify=true
+Categories=Network;InstantMessaging;FileTransfer;Chat;Email;
diff --git a/~xihh/retroshare/retroshare.install b/~xihh/retroshare/retroshare.install
new file mode 100644
index 000000000..e406a579e
--- /dev/null
+++ b/~xihh/retroshare/retroshare.install
@@ -0,0 +1,15 @@
+post_install() {
+ # Update Desktop DB
+ if [ "x`which update-desktop-database 2>/dev/null`" != "x" ]; then
+ echo "Update desktop database..."
+ update-desktop-database -q ;
+ fi
+}
+
+post_upgrade() {
+ post_install
+}
+
+post_remove() {
+ post_install
+}
diff --git a/~xihh/retroshare/retroshare.sh b/~xihh/retroshare/retroshare.sh
new file mode 100644
index 000000000..1204e497d
--- /dev/null
+++ b/~xihh/retroshare/retroshare.sh
@@ -0,0 +1 @@
+cd /opt/retroshare && ./retroshare $*
diff --git a/~xihh/ugene/PKGBUILD b/~xihh/ugene/PKGBUILD
new file mode 100644
index 000000000..24ebac2bb
--- /dev/null
+++ b/~xihh/ugene/PKGBUILD
@@ -0,0 +1,29 @@
+# Maintainer: bmpvieira <mail AT bmpvieira DOT com>
+pkgname=ugene
+pkgver=1.9.3
+pkgrel=2
+pkgdesc="A free cross-platform genome analysis suite."
+arch=('i686' 'x86_64' 'mips64el')
+url="http://ugene.unipro.ru/"
+license=('GPL')
+depends=('qt' 'mesa')
+source=(${url}downloads/$pkgname-$pkgver.tar.gz)
+md5sums=('6ba5ff1bed47d928feb04ec15565c2b6')
+
+build() {
+ cd "$srcdir/$pkgname-$pkgver"
+ case "$CARCH" in
+ "i686")
+ qmake PREFIX=/usr -r ;;
+ "x86_64"|"mips64el")
+ qmake CONFIG+=x64 PREFIX=/usr -r ;;
+ esac
+ make release || return 1
+}
+
+package() {
+ cd "$srcdir/$pkgname-$pkgver"
+ make INSTALL_ROOT="$pkgdir" install || return 1
+}
+
+# vim:set ts=2 sw=2 et:
diff --git a/~xihh/viennarna/PKGBUILD b/~xihh/viennarna/PKGBUILD
new file mode 100644
index 000000000..37de53d11
--- /dev/null
+++ b/~xihh/viennarna/PKGBUILD
@@ -0,0 +1,42 @@
+# $Id: pkgbuild-mode.el,v 1.23 2007/10/20 16:02:14 juergen Exp $
+# Maintainer: Joshua Ismael Haase Hernandez <joshpar@stravy>
+pkgbase='viennarna'
+pkgname=('viennarna' 'python2-viennarna')
+pkgver=1.8.5
+pkgrel=1
+pkgdesc="RNA Secondary Structure Prediction and Comparison"
+arch=('i686' 'x86_64' 'mips64el')
+url="http://www.tbi.univie.ac.at/RNA/"
+makedepends=('python2' 'swig')
+license=('Custom:BSD3')
+source=("setup.py"
+ "http://www.tbi.univie.ac.at/RNA/ViennaRNA-${pkgver}.tar.gz")
+md5sums=('d006ef9bb878aea6c184afa89986788e'
+ 'cd70d63cc1be928a5f0973bd6c211e96')
+
+build() {
+ cd "$srcdir/ViennaRNA-$pkgver"
+ ./configure --prefix=/usr --without-forester
+ make
+}
+
+package_viennarna() {
+ cd "$srcdir/ViennaRNA-$pkgver"
+ make DESTDIR="$pkgdir/" install
+}
+
+package_python2-viennarna() {
+ depends=('python2')
+ options=(!emptydirs)
+
+ mkdir -p "$srcdir/ViennaRNA-$pkgver/Python"
+ cp -r $srcdir/ViennaRNA-$pkgver/Perl/*.i "$srcdir/setup.py" \
+ "$srcdir/ViennaRNA-$pkgver/Python"
+
+ cd "$srcdir/ViennaRNA-$pkgver/Python"
+
+ swig -python RNA.i
+
+ python2 setup.py install --root="$pkgdir/" --optimize=1
+
+}
diff --git a/~xihh/viennarna/setup.py b/~xihh/viennarna/setup.py
new file mode 100644
index 000000000..00ac0a28d
--- /dev/null
+++ b/~xihh/viennarna/setup.py
@@ -0,0 +1,31 @@
+#!/usr/bin/env python
+
+from distutils.core import setup, Extension
+import os
+import sys
+
+old_filename = os.path.join(os.path.curdir, "RNA.py")
+new_filename = os.path.join(os.path.curdir, "__init__.py")
+if os.path.exists(old_filename):
+ os.rename(old_filename, new_filename)
+
+extra_link_args = []
+if sys.platform != 'darwin':
+ extra_link_args.append('-s')
+
+extension = Extension("_RNA",
+ ["RNA_wrap.c"],
+ libraries=['RNA'],
+ library_dirs=['lib'],
+ extra_link_args=extra_link_args
+ )
+
+setup(name="RNA",
+ version="1.8.5",
+ description="Vienna RNA",
+ author="Ivo Hofacker, Institute for Theoretical Chemistry, University of Vienna",
+ url="http://www.tbi.univie.ac.at/RNA/",
+ package_dir = {'vienna': os.path.curdir},
+ packages = ['vienna'],
+ ext_modules=[extension],
+ )