18 files changed, 632 insertions, 0 deletions
diff --git a/~xihh/blast/PKGBUILD b/~xihh/blast/PKGBUILD
new file mode 100644
index 000000000..70ab81dcc
--- /dev/null
+++ b/~xihh/blast/PKGBUILD
@@ -0,0 +1,31 @@
+# Maintainer: Joshua Haase <hahj87@gmail.com>
+pkgname='blast'
+pkgver=2.2.25
+pkgrel=1
+pkgdesc="Basic Local Alignment Search Tool: BLAST finds regions of similarity between biological sequences"
+arch=('i686' 'x86_64' 'mips64el')
+url="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastHome"
+license=('custom:Public_Domain')
+makedepends=()
+depends=()
+optdepends=()
+source=("ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/$pkgver/ncbi-blast-$pkgver+-src.tar.gz")
+md5sums=('01256b808e3af49a5087945b6a8c8293')
+
+build() {
+  cd "$srcdir/ncbi-blast-${pkgver}+-src/c++"
+  ./configure --prefix=/usr
+  make
+}
+
+check() {
+  cd "$srcdir/ncbi-blast-${pkgver}+-src/c++"
+  make -k check
+}
+
+package() {
+  cd "$srcdir/ncbi-blast-${pkgver}+-src/c++"
+  make DESTDIR="$pkgdir/" install
+}
+
+# vim:set ts=2 sw=2 et:
diff --git a/~xihh/contrafold/PKGBUILD b/~xihh/contrafold/PKGBUILD
new file mode 100644
index 000000000..4cf9c1085
--- /dev/null
+++ b/~xihh/contrafold/PKGBUILD
@@ -0,0 +1,23 @@
+# $Id: pkgbuild-mode.el,v 1.23 2007/10/20 16:02:14 juergen Exp $
+# Maintainer: Joshua Ismael Haase Hernandez <joshpar@stravy>
+pkgname=contrafold
+pkgver=2_02
+pkgrel=1
+epoch=
+pkgdesc="An RNA secondary structure folder."
+arch=('i686' 'x86_64')
+url="http://contra.stanford.edu/contrafold/"
+license=('Custom:BSD3')
+source=(http://contra.stanford.edu/contrafold/contrafold_v${pkgver}.tar.gz)
+md5sums=('cea66c63df835fe7f790c7f49ce83ef3')
+
+build() {
+  cd "$srcdir/$pkgname/src"
+  # ./configure --prefix=/usr
+  make
+}
+
+package() {
+  cd "$srcdir/$pkgname/src"
+  make DESTDIR="$pkgdir/" install
+}
diff --git a/~xihh/django-ajax-selects/PKGBUILD b/~xihh/django-ajax-selects/PKGBUILD
new file mode 100644
index 000000000..e0255e745
--- /dev/null
+++ b/~xihh/django-ajax-selects/PKGBUILD
@@ -0,0 +1,53 @@
+# $Id: pkgbuild-mode.el,v 1.23 2007/10/20 16:02:14 juergen Exp $
+# Maintainer: Joshua Ismael Haase Hernandez <joshpar@none>
+pkgname=django-ajax-selects
+pkgver=20120215
+pkgrel=1
+epoch=
+pkgdesc=""
+arch=('i686' 'x86_64' 'mips64el')
+url="https://github.com/crucialfelix/django-ajax-selects"
+license=('GPL')
+groups=()
+depends=('python2')
+makedepends=('git')
+checkdepends=()
+optdepends=()
+provides=()
+conflicts=()
+replaces=()
+backup=()
+options=(!emptydirs)
+install=
+changelog=
+source=()
+md5sums=()
+noextract=()
+#generate with 'makepkg -g'
+
+_gitroot=git://github.com/crucialfelix/django-ajax-selects.git
+_gitname=django-ajax-selects
+
+build() {
+  cd "$srcdir"
+  msg "Connecting to GIT server...."
+
+  if [[ -d "$_gitname" ]]; then
+    cd "$_gitname" && git pull origin
+    msg "The local files are updated."
+  else
+    git clone "$_gitroot" "$_gitname"
+  fi
+
+  msg "GIT checkout done or server timeout"
+  msg "Starting build..."
+
+  rm -rf "$srcdir/$_gitname-build"
+  git clone "$srcdir/$_gitname" "$srcdir/$_gitname-build"
+  cd "$srcdir/$_gitname-build"
+}
+
+package() {
+  cd "$srcdir/$_gitname-build"
+  python setup.py install --root="$pkgdir/" --optimize=1
+}
diff --git a/~xihh/gmime24/PKGBUILD b/~xihh/gmime24/PKGBUILD
new file mode 100644
index 000000000..d50f71c4d
--- /dev/null
+++ b/~xihh/gmime24/PKGBUILD
@@ -0,0 +1,35 @@
+# $Id: PKGBUILD 150770 2012-02-21 20:45:23Z ibiru $
+# Maintainer: Jan de Groot <jgc@archlinux.org>
+# Contributor: Ben <ben@benmazer.net>
+
+_pkgbase=gmime
+pkgname=gmime24
+pkgver=2.4.32
+pkgrel=1
+pkgdesc="Core mime parsing library"
+arch=('i686' 'x86_64' 'mips64el')
+license=('GPL')
+url="http://spruce.sourceforge.net/gmime/"
+depends=('glib2' 'gpgme' 'zlib')
+makedepends=('gtk-sharp-2' 'pkgconfig')
+[ "$CARCH" = "mips64el" ] && unset makedepends
+options=('!libtool')
+source=(http://ftp.gnome.org/pub/GNOME/sources/$_pkgbase/${pkgver%.*}/$_pkgbase-$pkgver.tar.xz)
+sha256sums=('a0e8f3a1949e7281e92edc5dd6309a7ca34b6838c6acf7b7f1563a41b5ddd74b')
+
+build() {
+  # get rid of that .wapi errors in fakeroot
+  export MONO_SHARED_DIR="$srcdir/weird"
+  mkdir -p "$MONO_SHARED_DIR"
+
+  cd "$srcdir/$_pkgbase-$pkgver"
+
+  ./configure --prefix=/usr --enable-smime \
+      --disable-static
+  make
+}
+
+package() {
+  cd "$srcdir/$_pkgbase-$pkgver"
+  make DESTDIR="$pkgdir" install
+}
diff --git a/~xihh/libtre/PKGBUILD b/~xihh/libtre/PKGBUILD
new file mode 100644
index 000000000..ad111c45d
--- /dev/null
+++ b/~xihh/libtre/PKGBUILD
@@ -0,0 +1,47 @@
+# $Id: pkgbuild-mode.el,v 1.23 2007/10/20 16:02:14 juergen Exp $
+# Maintainer: Joshua Ismael Haase Hernandez <joshpar@stravy>
+pkgbase='libtre'
+pkgname=('libtre' 'python2-tre')
+pkgver=0.8.0
+pkgrel=1
+pkgdesc="The free and portable approximate regex matching library."
+arch=('i686' 'x86_64' 'mips64el')
+url="http://laurikari.net/tre/download/"
+license=('custom:BSD2')
+groups=()
+depends=()
+makedepends=('python' 'python2')
+checkdepends=()
+optdepends=()
+provides=()
+conflicts=()
+replaces=()
+backup=()
+options=()
+install=
+changelog=
+source=("http://laurikari.net/tre/tre-${pkgver}.tar.bz2")
+md5sums=('b4d3232593dadf6746f4727bdda20b41')
+noextract=()
+
+build() {
+  cd "$srcdir/tre-$pkgver"
+  ./configure --prefix=/usr
+  make
+}
+
+check() {
+  cd "$srcdir/tre-$pkgver"
+  make -k check || true # some errors expected
+}
+
+package_libtre() {
+  cd "$srcdir/tre-$pkgver"
+  make DESTDIR="$pkgdir/" install
+}
+
+package_python2-tre() {
+  depends=('libtre')
+  cd "$srcdir/tre-$pkgver/python"
+  python2 setup.py install --root="$pkgdir/" --optimize=1
+}
diff --git a/~xihh/lyx-clasicthesis/PKGBUILD b/~xihh/lyx-clasicthesis/PKGBUILD
new file mode 100644
index 000000000..8e63e2025
--- /dev/null
+++ b/~xihh/lyx-clasicthesis/PKGBUILD
@@ -0,0 +1,30 @@
+# $Id: pkgbuild-mode.el,v 1.23 2007/10/20 16:02:14 juergen Exp $
+# Maintainer: Joshua Ismael Haase Hernandez <joshpar@stravy>
+pkgname=lyx-clasicthesis
+pkgver=3.1-beta1
+pkgrel=1
+pkgdesc="A Classic Thesis Style for LaTeX and LyX"
+arch=('any')
+url="https://code.google.com/p/classicthesis/"
+license=('GPL')
+groups=()
+depends=('lyx')
+source=(https://code.google.com/p/classicthesis/downloads/detail?name=ClassicThesis-LyX-v${pkgver}.zip)
+md5sums=('a437079a70466adadf8f7034e02ebd85')
+noextract=()
+
+build() {
+  cd "$srcdir/$pkgname-$pkgver"
+  ./configure --prefix=/usr
+  make
+}
+
+check() {
+  cd "$srcdir/$pkgname-$pkgver"
+  make -k check
+}
+
+package() {
+  cd "$srcdir/$pkgname-$pkgver"
+  make DESTDIR="$pkgdir/" install
+}
diff --git a/~xihh/muscle/LICENSE b/~xihh/muscle/LICENSE
new file mode 100644
index 000000000..e48f525fe
--- /dev/null
+++ b/~xihh/muscle/LICENSE
@@ -0,0 +1,10 @@
+MUSCLE is public domain software 
+
+The MUSCLE software, including object and source code and
+documentation, is hereby donated to the public domain.
+
+Disclaimer of warranty
+
+THIS SOFTWARE IS PROVIDED "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER
+EXPRESS OR IMPLIED, INCLUDING WITHOUT LIMITATION IMPLIED WARRANTIES OF
+MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.
diff --git a/~xihh/muscle/PKGBUILD b/~xihh/muscle/PKGBUILD
new file mode 100644
index 000000000..101e2e312
--- /dev/null
+++ b/~xihh/muscle/PKGBUILD
@@ -0,0 +1,38 @@
+# $Id: pkgbuild-mode.el,v 1.23 2007/10/20 16:02:14 juergen Exp $
+# Maintainer: Joshua Ismael Haase Hernandez <joshpar@stravy>
+pkgname=muscle
+pkgver=3.8.31
+pkgrel=1
+epoch=
+pkgdesc="multiple sequence comparison by log-expectation"
+arch=('i686' 'x86_64' 'mips64el')
+url="http://www.drive5.com/muscle/"
+license=('custom:PublicDomain')
+groups=()
+depends=()
+makedepends=('gcc-libs')
+checkdepends=()
+optdepends=()
+provides=()
+conflicts=()
+replaces=()
+backup=()
+options=()
+install=
+changelog=
+source=(http://www.drive5.com/muscle/downloads${pkgver}/muscle${pkgver}_src.tar.gz LICENSE)
+md5sums=('f767f00fd15f0c5db944d41936779e10'
+         '57cfb6975987af93c89977f084d53b72')
+noextract=()
+
+build() {
+  cd "$srcdir/$pkgname$pkgver/src"
+  sed -i 's/ -msse2 -mfpmath=sse//' mk
+  make
+}
+
+package() {
+  cd "$srcdir/$pkgname$pkgver/src"
+  install -D -m755 muscle "$pkgdir/usr/bin/muscle"
+  install -D -m644 "$srcdir/LICENSE" "$pkgdir/usr/share/licenses/$pkgname/LICENSE"
+}
diff --git a/~xihh/notmuch-address/PKGBUILD b/~xihh/notmuch-address/PKGBUILD
new file mode 100644
index 000000000..908f40b22
--- /dev/null
+++ b/~xihh/notmuch-address/PKGBUILD
@@ -0,0 +1,58 @@
+# $Id: pkgbuild-mode.el,v 1.23 2007/10/20 16:02:14 juergen Exp $
+# Maintainer: Joshua Ismael Haase Hernandez <joshpar@stravy>
+pkgname=notmuch-address
+pkgver=20120201
+pkgrel=1
+epoch=
+pkgdesc="Address completion for notmuch"
+arch=('any')
+url=""
+license=('GPL')
+groups=()
+depends=(python2)
+makedepends=(git)
+checkdepends=()
+optdepends=()
+provides=()
+conflicts=()
+replaces=()
+backup=()
+options=()
+install=
+changelog=
+source=()
+md5sums=()
+noextract=()
+#generate with 'makepkg -g'
+_gitroot=http://commonmeasure.org/~jkr/git/notmuch_addresses.git
+_gitname=notmuch-adress
+
+build() {
+  cd "$srcdir"
+  msg "Connecting to GIT server...."
+
+  if [[ -d "$_gitname" ]]; then
+    cd "$_gitname" && git pull origin
+    msg "The local files are updated."
+  else
+    git clone "$_gitroot" "$_gitname"
+  fi
+
+  msg "GIT checkout done or server timeout"
+  msg "Starting build..."
+
+  rm -rf "$srcdir/$_gitname-build"
+  git clone "$srcdir/$_gitname" "$srcdir/$_gitname-build"
+  cd "$srcdir/$_gitname-build"
+
+  #
+  # BUILD HERE
+  #
+}
+
+package() {
+  cd "$srcdir/$_gitname-build"
+  sed -i "s_#!/usr/bin/env python_#!/usr/bin/env python2_" notmuch_addresses.py
+  install -d $pkgdir/usr/bin
+  install -m755 notmuch_addresses.py $pkgdir/usr/bin/notmuch_addresses.py
+}
+\ No newline at end of file
diff --git a/~xihh/python2-apsw/LICENSE b/~xihh/python2-apsw/LICENSE
new file mode 100644
index 000000000..a0470b2a0
--- /dev/null
+++ b/~xihh/python2-apsw/LICENSE
@@ -0,0 +1,15 @@
+Copyright (C) 2004-2009 Roger Binns
+
+This software is provided ‘as-is’, without any express or implied warranty. In no event will the authors be held liable
+for any damages arising from the use of this software.
+
+Permission is granted to anyone to use this software for any purpose, including commercial applications, and to alter it
+and redistribute it freely, subject to the following restrictions: 
+
+- The origin of this software must not be misrepresented; you must not claim that you wrote the original software. If
+  you use this software in a product, an acknowledgment in the product documentation would be appreciated but is not
+  required.
+
+- Altered source versions must be plainly marked as such, and must not be misrepresented as being the original software.
+
+- This notice may not be removed or altered from any source distribution.
diff --git a/~xihh/python2-apsw/PKGBUILD b/~xihh/python2-apsw/PKGBUILD
new file mode 100644
index 000000000..92ce6d309
--- /dev/null
+++ b/~xihh/python2-apsw/PKGBUILD
@@ -0,0 +1,23 @@
+# Maintainer: Linmiao Xu <linmiao.xu@gmail.com>
+# Contributor: Juan Miguel Cejuela <jmcejuela@ashrentum.net>
+
+pkgname=python2-apsw
+pkgver=3.7.9_r1
+pkgrel=1
+pkgdesc="Python wrapper for SQLite"
+arch=('i686' 'x86_64' 'mips64el')
+url="http://code.google.com/p/apsw/"
+license=('MIT')
+depends=('python2' 'sqlite3')
+source=("http://apsw.googlecode.com/files/apsw-${pkgver//_/-}.zip" 'LICENSE')
+
+md5sums=('8188a05819553a7a9aad568db23850af'
+         'efc704d50cb39441d00f9dc76cbe6665')
+
+build() {
+  cd $srcdir/apsw-${pkgver//_/-}
+  python2 setup.py install --root=$pkgdir/
+
+  install -D -m644 $srcdir/LICENSE $pkgdir/usr/share/licenses/$pkgname/LICENSE
+}
+
diff --git a/~xihh/retroshare/PKGBUILD b/~xihh/retroshare/PKGBUILD
new file mode 100644
index 000000000..7c62e2254
--- /dev/null
+++ b/~xihh/retroshare/PKGBUILD
@@ -0,0 +1,140 @@
+# Maintainer: stqn
+# Contributor: JHeaton <jheaton at archlinux dot us>
+# Contributor: Tristero <tristero at online dot de>
+# Contributor: funkyou
+
+pkgname=retroshare
+pkgver=0.5.3b
+pkgrel=5
+pkgdesc="Serverless encrypted instant messenger with filesharing, chatgroups, e-mail."
+arch=('i686' 'x86_64' 'mips64el')
+url="http://retroshare.sourceforge.net/"
+license=('LGPL' 'GPL')
+depends=('qt' 'libupnp' 'gpgme' 'libgnome-keyring' 'libxss')
+install="${pkgname}.install"
+
+source=(http://sourceforge.net/projects/retroshare/files/RetroShare/${pkgver}/RetroShare-v${pkgver}.tar.gz \
+        ${pkgname}.sh \
+        ${pkgname}.install \
+        ${pkgname}.desktop)
+
+sha256sums=('bd602a8a144597381659191561c19aaf9993eab0e0955cba8e6923b7efa30b0e'
+            '79d390eecea24ac51caa869fa8e0813abae092c75873527e180e0c965dac6f8e'
+            '5ba8c11c312b232b1935ee0918d020b049e4993cd8701e0446af4f8f637f4dce'
+            '70be00968f2477e368f75393f193e76f366fff2dadab869c855e92048060cf29')
+
+# Setting this to TRUE activates the compilation and packaging
+# of the plugins which are not yet officially released.
+# NOTE: doesn't work at the moment.
+_USE_PLUGINS=FALSE
+
+# Setting this to TRUE activates the compilation and packaging
+# of retroshare-nogui
+_USE_NOGUI=FALSE
+
+build() {
+  cd ${srcdir}
+
+  msg "Compiling libbitdht..."
+  cd ${srcdir}/trunk/libbitdht/src
+  qmake
+  make
+
+  msg "Compiling libretroshare..."
+  cd ${srcdir}/trunk/libretroshare/src
+  qmake
+  make
+
+  if [ "x$_USE_PLUGINS" == "xTRUE" ] ; then
+    msg "Compiling retroshare plugins..."
+    cd ${srcdir}/trunk/plugins
+    qmake
+    make
+  fi
+
+  msg "Compiling retroshare-gui..."
+  cd ${srcdir}/trunk/retroshare-gui/src
+  # Add missing libs
+  sed -i "s/-lssl -lgpgme -lupnp -lixml -lXss -lgnome-keyring/-lssl -lcrypto -ldl -lX11 -lgpgme -lupnp -lixml -lXss -lgnome-keyring/" RetroShare.pro
+  qmake
+  make
+
+  if [ "x$_USE_NOGUI" == "xTRUE" ] ; then
+    msg "Compiling retroshare-nogui..."
+    cd ${srcdir}/trunk/retroshare-nogui/src
+    # Add missing libs
+    sed -i "s/-lssl -lgpgme -lupnp -lixml -lgnome-keyring/-lssl -lcrypto -ldl -lgpgme -lupnp -lixml -lgnome-keyring/" retroshare-nogui.pro
+    qmake
+    make
+  fi
+}
+
+package() {
+
+  # --- Install Files ---
+
+  msg "Install files to fakeroot-environment"
+
+  # - Binaries
+  # Not installing the static libraries since there's no SDK anyway
+  #install -D -m 644 \
+  #  "${srcdir}/trunk/libbitdht/src/lib/libbitdht.a" \
+  #  "${pkgdir}/usr/lib/libbitdht.a"
+  #install -D -m 644 \
+  #  "${srcdir}/trunk/libretroshare/src/lib/libretroshare.a" \
+  #  "${pkgdir}/usr/lib/libretroshare.a"
+
+  install -D -m 755 \
+    "${srcdir}/trunk/retroshare-gui/src/RetroShare" \
+    "${pkgdir}/opt/${pkgname}/${pkgname}"
+
+  install -D -m 755 \
+    "${pkgname}.sh" \
+    "${pkgdir}/usr/bin/${pkgname}"
+
+  if [ "x$_USE_NOGUI" == "xTRUE" ] ; then
+    install -D -m 755 \
+	"${srcdir}/trunk/retroshare-nogui/src/retroshare-nogui" \
+        "${pkgdir}/usr/bin/${pkgname}-nogui"
+  fi
+
+  # plugins
+
+  if [ "x$_USE_PLUGINS" == "xTRUE" ] ; then
+    # missing : LinksCloud
+    install -D -m 755 \
+	"${srcdir}/trunk/plugins/bin/libcalendar_plugin.so" \
+	"${pkgdir}/usr/lib/retroshare/plugins/libcalendar_plugin.so"
+    install -D -m 755 \
+	"${srcdir}/trunk/plugins/bin/libpuzzle_plugin.so" \
+	"${pkgdir}/usr/lib/retroshare/plugins/libpuzzle_plugin.so"
+    install -D -m 755 \
+	"${srcdir}/trunk/plugins/bin/libqcheckers_plugin.so" \
+	"${pkgdir}/usr/lib/retroshare/plugins/libqcheckers_plugin.so"
+    install -D -m 755 \
+	"${srcdir}/trunk/plugins/bin/libqdiagram_plugin.so" \
+	"${pkgdir}/usr/lib/retroshare/plugins/libqdiagram_plugin.so"
+  fi
+
+  # Style sheets
+  cp -r "${srcdir}/trunk/retroshare-gui/src/qss" "$pkgdir/opt/retroshare/"
+  chmod 755 "$pkgdir/opt/retroshare/qss"
+
+  # Icons
+  #install -D -m 644 \
+  #  "${srcdir}/trunk/retroshare-gui/src/gui/images/retrosharelogo1.png" \
+  #  "${pkgdir}/usr/share/pixmaps/retroshare_blue.png"
+  install -D -m 644 \
+    "${srcdir}/trunk/retroshare-gui/src/gui/images/retrosharelogo2.png" \
+    "${pkgdir}/usr/share/pixmaps/retroshare.png"
+
+  # Desktop File
+  install -D -m 644 \
+    "${srcdir}/${pkgname}.desktop" \
+    "${pkgdir}/usr/share/applications/${pkgname}.desktop"
+
+  # bdboot (needed to bootstrap the DHT)
+  install -D -m 644 \
+    "${srcdir}/trunk/libbitdht/src/bitdht/bdboot.txt" \
+    "${pkgdir}/usr/share/RetroShare/bdboot.txt"
+}
diff --git a/~xihh/retroshare/retroshare.desktop b/~xihh/retroshare/retroshare.desktop
new file mode 100644
index 000000000..0c3f56180
--- /dev/null
+++ b/~xihh/retroshare/retroshare.desktop
@@ -0,0 +1,11 @@
+[Desktop Entry]
+Version=1.0
+Type=Application
+Name=RetroShare
+GenericName=Sharing Network
+Comment=Secure Communication with Your Friends
+Icon=/usr/share/pixmaps/retroshare.png
+Exec=/usr/bin/retroshare
+Terminal=false
+StartupNotify=true
+Categories=Network;InstantMessaging;FileTransfer;Chat;Email;
diff --git a/~xihh/retroshare/retroshare.install b/~xihh/retroshare/retroshare.install
new file mode 100644
index 000000000..e406a579e
--- /dev/null
+++ b/~xihh/retroshare/retroshare.install
@@ -0,0 +1,15 @@
+post_install() {
+	# Update Desktop DB
+	if [ "x`which update-desktop-database 2>/dev/null`" != "x" ]; then
+		echo "Update desktop database..."
+		update-desktop-database -q ;
+	fi
+}
+
+post_upgrade() {
+	post_install
+}
+
+post_remove() {
+	post_install
+}
diff --git a/~xihh/retroshare/retroshare.sh b/~xihh/retroshare/retroshare.sh
new file mode 100644
index 000000000..1204e497d
--- /dev/null
+++ b/~xihh/retroshare/retroshare.sh
@@ -0,0 +1 @@
+cd /opt/retroshare && ./retroshare $*
diff --git a/~xihh/ugene/PKGBUILD b/~xihh/ugene/PKGBUILD
new file mode 100644
index 000000000..24ebac2bb
--- /dev/null
+++ b/~xihh/ugene/PKGBUILD
@@ -0,0 +1,29 @@
+# Maintainer: bmpvieira <mail AT bmpvieira DOT com>
+pkgname=ugene
+pkgver=1.9.3
+pkgrel=2
+pkgdesc="A free cross-platform genome analysis suite."
+arch=('i686' 'x86_64' 'mips64el')
+url="http://ugene.unipro.ru/"
+license=('GPL')
+depends=('qt' 'mesa')
+source=(${url}downloads/$pkgname-$pkgver.tar.gz)
+md5sums=('6ba5ff1bed47d928feb04ec15565c2b6')
+
+build() {
+  cd "$srcdir/$pkgname-$pkgver"
+  case "$CARCH" in
+    "i686")
+      qmake PREFIX=/usr -r ;;
+    "x86_64"|"mips64el")
+      qmake CONFIG+=x64 PREFIX=/usr -r ;;
+  esac
+  make release || return 1
+}
+
+package() {
+  cd "$srcdir/$pkgname-$pkgver"
+  make INSTALL_ROOT="$pkgdir" install || return 1
+}
+
+# vim:set ts=2 sw=2 et:
diff --git a/~xihh/viennarna/PKGBUILD b/~xihh/viennarna/PKGBUILD
new file mode 100644
index 000000000..37de53d11
--- /dev/null
+++ b/~xihh/viennarna/PKGBUILD
@@ -0,0 +1,42 @@
+# $Id: pkgbuild-mode.el,v 1.23 2007/10/20 16:02:14 juergen Exp $
+# Maintainer: Joshua Ismael Haase Hernandez <joshpar@stravy>
+pkgbase='viennarna'
+pkgname=('viennarna' 'python2-viennarna')
+pkgver=1.8.5
+pkgrel=1
+pkgdesc="RNA Secondary Structure Prediction and Comparison"
+arch=('i686' 'x86_64' 'mips64el')
+url="http://www.tbi.univie.ac.at/RNA/"
+makedepends=('python2' 'swig')
+license=('Custom:BSD3')
+source=("setup.py"
+        "http://www.tbi.univie.ac.at/RNA/ViennaRNA-${pkgver}.tar.gz")
+md5sums=('d006ef9bb878aea6c184afa89986788e'
+         'cd70d63cc1be928a5f0973bd6c211e96')
+
+build() {
+  cd "$srcdir/ViennaRNA-$pkgver"
+  ./configure --prefix=/usr --without-forester
+  make
+}
+
+package_viennarna() {
+  cd "$srcdir/ViennaRNA-$pkgver"
+  make DESTDIR="$pkgdir/" install
+}
+
+package_python2-viennarna() {
+  depends=('python2')
+  options=(!emptydirs)
+
+  mkdir -p "$srcdir/ViennaRNA-$pkgver/Python"
+  cp -r $srcdir/ViennaRNA-$pkgver/Perl/*.i "$srcdir/setup.py" \
+    "$srcdir/ViennaRNA-$pkgver/Python"
+
+  cd "$srcdir/ViennaRNA-$pkgver/Python"
+
+  swig -python RNA.i
+
+  python2 setup.py install --root="$pkgdir/" --optimize=1
+
+}
diff --git a/~xihh/viennarna/setup.py b/~xihh/viennarna/setup.py
new file mode 100644
index 000000000..00ac0a28d
--- /dev/null
+++ b/~xihh/viennarna/setup.py
@@ -0,0 +1,31 @@
+#!/usr/bin/env python
+
+from distutils.core import setup, Extension
+import os
+import sys
+
+old_filename = os.path.join(os.path.curdir, "RNA.py")
+new_filename = os.path.join(os.path.curdir, "__init__.py")
+if os.path.exists(old_filename):
+    os.rename(old_filename, new_filename)
+
+extra_link_args = []
+if sys.platform != 'darwin':
+    extra_link_args.append('-s')
+
+extension = Extension("_RNA",
+                      ["RNA_wrap.c"],
+                      libraries=['RNA'],
+                      library_dirs=['lib'],
+                      extra_link_args=extra_link_args
+                      )
+
+setup(name="RNA",
+      version="1.8.5",
+      description="Vienna RNA",
+      author="Ivo Hofacker, Institute for Theoretical Chemistry, University of Vienna",
+      url="http://www.tbi.univie.ac.at/RNA/",
+      package_dir = {'vienna': os.path.curdir},
+      packages = ['vienna'],
+      ext_modules=[extension],
+      )