# $Id: PKGBUILD 112179 2014-05-29 15:06:03Z arcanis $
# Maintainer: Evgeniy Alekseev <arcanis.arch at gmail dot com>
# Contributor: Stunts <f.pinamartins at gmail dot com>
# Contributor: damir <damir at archlinux dot org>

pkgbase=python-biopython
pkgname=('python-biopython' 'python2-biopython')
_pkgname=biopython
pkgver=1.64
pkgrel=1
pkgdesc="Freely available Python tools for computational molecular biology"
arch=('i686' 'x86_64')
url="http://www.biopython.org"
license=('custom')
depends=('python-numpy' 'python2-numpy')
source=(http://www.biopython.org/DIST/${_pkgname}-${pkgver}.tar.gz)
md5sums=('c7636372c4e775d59391e0aa1f0c56c7')

prepare() {
  cp -r "${_pkgname}-${pkgver}" "${_pkgname}-${pkgver}-py2"
  # change python to python2
  find "${_pkgname}-${pkgver}-py2" -name '*.py' -type f -exec \
      sed -i 's|env python|env python2|' {} \;
}

build() {
  cd "${srcdir}/${_pkgname}-${pkgver}"
  python setup.py build

  cd "${srcdir}/${_pkgname}-${pkgver}-py2"
  python2 setup.py build
}

package_python-biopython() {
  depends=('python-numpy')

  cd "${srcdir}/${_pkgname}-${pkgver}"
  python setup.py install --root="${pkgdir}"
  install -Dm644 "LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
}

package_python2-biopython() {
  depends=('python2-numpy')
  optdepends=('python2-reportlab: for pdf graphics code'
              'mysql-python: for BioSQL module')

  cd "${srcdir}/${_pkgname}-${pkgver}-py2"
  python2 setup.py install --root="${pkgdir}"
  install -Dm644 "LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
}