sagemath-7.4-13.parabola1: arb 2.9 rebuild

2 files changed, 119 insertions, 4 deletions

diff --git a/libre/sagemath/PKGBUILD b/libre/sagemath/PKGBUILD
index 182405106..6c63c4dfa 100644
--- a/libre/sagemath/PKGBUILD
+++ b/libre/sagemath/PKGBUILD
@@ -1,4 +1,4 @@
-# $Id: PKGBUILD 197484 2016-12-01 06:57:57Z arojas $
+# $Id: PKGBUILD 197777 2016-12-02 21:06:23Z arojas $
 # Maintainer (Arch): Evgeniy Alekseev <arcanis.arch at gmail dot com>
 # Maintainer (Arch): Antonio Rojas <arojas@archlinux.org>
 # Contributor (Arch): Daniel Wallace <danielwallace at gtmanfred dot com>
@@ -11,7 +11,7 @@
 
 pkgname=sagemath
 pkgver=7.4
-pkgrel=12.parabola1
+pkgrel=13.parabola1
 pkgdesc="Free Mathematics Software, free software replacement of Magma, Maple, Mathematica, and Matlab, without nonfree nauty support"
 arch=(i686 x86_64 armv7h)
 url="http://www.sagemath.org"
@@ -38,7 +38,7 @@ provides=(sage-mathematics)
 source=("$pkgname-$pkgver.tar.gz::https://github.com/sagemath/sage/archive/$pkgver.tar.gz"
         env.patch skip-check.patch cython-sys-path.patch is-package-installed.patch package.patch disable-fes.patch
         jupyter-path.patch test-optional.patch python-2.7.11.patch ecm-7.patch increase-rtol.patch sagemath-singular4.patch
-        sagemath-cython0.25.patch pynac-0.7.1.patch)
+        sagemath-cython0.25.patch pynac-0.7.1.patch sagemath-python2-pkgconfig-1.2.patch)
 md5sums=('8311ee35a309dbc668b5148795211254'
          '784ba3fca83f24ed0bbf62e01fa4e967'
          '6cafcb381437d4751fd55b25d5090987'
@@ -53,7 +53,8 @@ md5sums=('8311ee35a309dbc668b5148795211254'
          '39d3fded716d2a7ae0ab03e0896b7497'
          '4bd7305e8b69add8356f9751470cf587'
          'e76faa070a490de97818762ba340d9dc'
-         '32da930dcb7c4718acf0188e090c07b9')
+         '32da930dcb7c4718acf0188e090c07b9'
+         '329a483b16c0e1960b15b3ca3082f2d0')
 
 prepare(){
   cd sage-$pkgver
@@ -96,6 +97,9 @@ prepare(){
 # port to pynac 0.7.1
   patch -p1 -i ../pynac-0.7.1.patch
 
+# fix build with python2-pkgconfig 1.2
+  patch -p1 -i ../sagemath-python2-pkgconfig-1.2.patch
+
 # use python2
   sed -e 's|#!/usr/bin/env python|#!/usr/bin/env python2|' -e 's|exec python|exec python2|' -i src/bin/*
   sed -e 's|cython {OPT}|cython2 {OPT}|' -e 's|python setup.py|python2 setup.py|' -i src/sage/misc/cython.py
diff --git a/libre/sagemath/sagemath-python2-pkgconfig-1.2.patch b/libre/sagemath/sagemath-python2-pkgconfig-1.2.patch
new file mode 100644
index 000000000..2cecb94ab
--- /dev/null
+++ b/libre/sagemath/sagemath-python2-pkgconfig-1.2.patch
@@ -0,0 +1,111 @@
+--- sage-7.4/src/module_list.py.0	2016-12-02 18:55:28.123669807 +0000
++++ sage-7.4/src/module_list.py	2016-12-02 18:59:09.943258665 +0000
+@@ -13,9 +13,9 @@
+ 
+ # CBLAS can be one of multiple implementations
+ cblas_pc = pkgconfig.parse('cblas')
+-cblas_libs = list(cblas_pc['libraries'])
+-cblas_library_dirs = list(cblas_pc['library_dirs'])
+-cblas_include_dirs = list(cblas_pc['include_dirs'])
++cblas_libs = cblas_pc['libraries']
++cblas_library_dirs = cblas_pc['library_dirs']
++cblas_include_dirs = cblas_pc['include_dirs']
+ 
+ # TODO: Remove Cygwin hack by installing a suitable cblas.pc
+ if os.path.exists('/usr/lib/libblas.dll.a'):
+@@ -23,58 +23,59 @@
+ 
+ # LAPACK can be one of multiple implementations
+ lapack_pc = pkgconfig.parse('lapack')
+-lapack_libs = list(lapack_pc['libraries'])
+-lapack_library_dirs = list(lapack_pc['library_dirs'])
+-lapack_include_dirs = list(lapack_pc['include_dirs'])
++lapack_libs = lapack_pc['libraries']
++lapack_library_dirs = lapack_pc['library_dirs']
++lapack_include_dirs = lapack_pc['include_dirs']
+ 
+ # FFLAS-FFPACK
+ fflas_ffpack_pc = pkgconfig.parse('fflas-ffpack')
+-fflas_ffpack_libs = list(fflas_ffpack_pc['libraries'])
+-fflas_ffpack_library_dirs = list(fflas_ffpack_pc['library_dirs'])
++fflas_ffpack_libs = fflas_ffpack_pc['libraries']
++fflas_ffpack_library_dirs = fflas_ffpack_pc['library_dirs']
+ fflas_ffpack_cflags = pkgconfig.cflags('fflas-ffpack').split()
+ 
+ # Givaro
+ givaro_pc = pkgconfig.parse('givaro')
+-givaro_libs = list(givaro_pc['libraries'])
+-givaro_library_dirs = list(givaro_pc['library_dirs'])
++givaro_libs = givaro_pc['libraries']
++givaro_library_dirs = givaro_pc['library_dirs']
+ givaro_cflags = pkgconfig.cflags('givaro').split()
+ 
+ # GNU Scientific Library
+ # Note we replace the built-in gslcblas with the above cblas
+ gsl_pc = pkgconfig.parse('gsl')
+-gsl_libs = list(gsl_pc['libraries'].difference(['gslcblas']).union(cblas_libs))
+-gsl_library_dirs = list(gsl_pc['library_dirs'])
+-gsl_include_dirs = list(gsl_pc['include_dirs'])
++gsl_pc['libraries'].remove('gslcblas')
++gsl_libs = gsl_pc['libraries'] + cblas_libs
++gsl_library_dirs = gsl_pc['library_dirs']
++gsl_include_dirs = gsl_pc['include_dirs']
+ 
+ # GD image library
+ gd_pc = pkgconfig.parse('gdlib')
+-gd_libs = list(gd_pc['libraries'])
+-gd_library_dirs = list(gd_pc['library_dirs'])
+-gd_include_dirs = list(gd_pc['include_dirs'])
++gd_libs = gd_pc['libraries']
++gd_library_dirs = gd_pc['library_dirs']
++gd_include_dirs = gd_pc['include_dirs']
+ 
+ # LinBox
+ linbox_pc = pkgconfig.parse('linbox')
+-linbox_libs = list(linbox_pc['libraries'])
+-linbox_library_dirs = list(linbox_pc['library_dirs'])
++linbox_libs = linbox_pc['libraries']
++linbox_library_dirs = linbox_pc['library_dirs']
+ linbox_cflags = pkgconfig.cflags('linbox').split()
+ 
+ # Singular
+ singular_pc = pkgconfig.parse('Singular')
+-singular_libs = list(singular_pc['libraries'])
+-singular_library_dirs = list(singular_pc['library_dirs'])
++singular_libs = singular_pc['libraries']
++singular_library_dirs = singular_pc['library_dirs']
+ singular_cflags = pkgconfig.cflags('Singular').split()
+ 
+ # PNG image library
+ png_pc = pkgconfig.parse('libpng')
+-png_libs = list(png_pc['libraries'])
+-png_library_dirs = list(png_pc['library_dirs'])
+-png_include_dirs = list(png_pc['include_dirs'])
++png_libs = png_pc['libraries']
++png_library_dirs = png_pc['library_dirs']
++png_include_dirs = png_pc['include_dirs']
+ 
+ # zlib
+ zlib_pc = pkgconfig.parse('zlib')
+-zlib_libs = list(zlib_pc['libraries'])
+-zlib_library_dirs = list(zlib_pc['library_dirs'])
+-zlib_include_dirs = list(zlib_pc['include_dirs'])
++zlib_libs = zlib_pc['libraries']
++zlib_library_dirs = zlib_pc['library_dirs']
++zlib_include_dirs = zlib_pc['include_dirs']
+ 
+ 
+ #########################################################
+@@ -110,9 +110,9 @@
+ #########################################################
+ 
+ m4ri_pc = pkgconfig.parse('m4ri')
+-m4ri_libs = list(m4ri_pc['libraries'])
+-m4ri_library_dirs = list(m4ri_pc['library_dirs'])
+-m4ri_include_dirs = list(m4ri_pc['include_dirs'])
++m4ri_libs = m4ri_pc['libraries']
++m4ri_library_dirs = m4ri_pc['library_dirs']
++m4ri_include_dirs = m4ri_pc['include_dirs']
+ 
+ m4ri_extra_compile_args = pkgconfig.cflags('m4ri').split()
+ try: