summaryrefslogtreecommitdiff
path: root/libre/sagemath/PKGBUILD
blob: 513996394ba47d76979185e70267807cf018574c (plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
# $Id: PKGBUILD 147497 2015-11-23 23:34:30Z arojas $
# Maintainer (Arch): Evgeniy Alekseev <arcanis.arch at gmail dot com>
# Maintainer (Arch): Antonio Rojas <arojas@archlinux.org>
# Contributor (Arch): Daniel Wallace <danielwallace at gtmanfred dot com>
# Contributor (Arch): Thomas Dziedzic <gostrc at gmail dot com>
# Contributor (Arch): Osman Ugus <ugus11 at yahoo dot com>
# Contributor (Arch): Stefan Husmann <stefan-husmann at t-online dot de>
# Special thanks to Nareto for moving the compile from the .install to the PKGBUILD
# Maintainer: Omar Vega Ramos <ovruni@gnu.org.pe>
# Maintainer: André Silva <emulatorman@parabola.nu>

pkgname=sagemath
pkgver=6.9
pkgrel=4.parabola1
pkgdesc="Free Mathematics Software, free software replacement of Magma, Maple, Mathematica, and Matlab, without nonfree nauty recommendation"
arch=(i686 x86_64)
url="http://www.sagemath.org"
license=(GPL)
depends=(ipython2 atlas-lapack ppl mpfi palp brial singular libcliquer maxima-ecl gfan sympow tachyon python2-rpy2
  python2-matplotlib python2-scipy python2-sympy python2-networkx python2-igraph libgap gap flintqs lcalc lrcalc lrs
  eclib gmp-ecm zn_poly gd python2-cvxopt pynac linbox gsl rubiks pari-galdata pari-seadata-small planarity rankwidth
  sage-data-combinatorial_designs sage-data-elliptic_curves sage-data-graphs sage-data-polytopes_db sage-data-conway_polynomials)
optdepends=('cython2: to compile cython code' 'jmol: 3D plots' 'sage-notebook: Browser-based (flask) notebook interface'
  'sagemath-doc: Documentation and inline help' 'ipython2-notebook: Jupyter notebook interface' 'mathjax: Jupyter notebook interface'
  'coin-or-cbc: COIN backend for numerical computations'
  'buckygen: for generating fullerene graphs' 'plantri: for generating some classes of graphs' 'benzene: for generating fusenes and benzenoids'
  'modular_decomposition: modular decomposition of graphs' 'ffmpeg: to export animations to video' 'imagemagick: to show animations'
  'coxeter3: Coxeter groups implementation' 'cryptominisat: SAT solver' 'arb: floating-point ball arithmetic')
makedepends=(cython2 boost ratpoints symmetrica fflas-ffpack python2-jinja coin-or-cbc
  mcqd coxeter3 cryptominisat arb modular_decomposition bliss-graphs) # libfes
conflicts=(sage-mathematics)
replaces=(sage-mathematics)
provides=(sage-mathematics)
source=("$pkgname-$pkgver.tar.gz::https://github.com/sagemath/sage/archive/$pkgver.tar.gz" 
	"http://mirrors.mit.edu/sage/spkg/upstream/pexpect/pexpect-2.0.tar.bz2"
	anal.h package.patch env.patch paths.patch clean.patch skip-check.patch
	pexpect-env.patch pexpect-del.patch disable-fes.patch jupyter-path.patch test-optional.patch
	pari-sage-2.8.1813.patch::"http://git.sagemath.org/sage.git/patch/?id=c1f5aa26e"
	jupyter-kernel.patch::"http://git.sagemath.org/sage.git/patch/?id=4f06d3df"
	relative-links.patch::"http://git.sagemath.org/sage.git/patch/src/sage/repl/ipython_kernel/kernel.py?id=52a717a7")
md5sums=('847ad447eaef17b2bc81bb4fae69c190'
         'd9a3e113ed147dcee8f89962a8dccd43'
         'a906a180d198186a39820b0a2f9a9c63'
         '9ba81f717ffd4e20b8b2f2a318307488'
         'e1b1d0d2e6b187309ae2b74489356b9a'
         'fd8e3e07f5b7318e6a7200a3c64f5bc2'
         '23e972753be1e5d0f761a7f82a95cebf'
         '5947a420a0b1483f0cbc74c76895789b'
         'a83a3b1bc7fcb7cbf752a83a8311fc42'
         'f333939ea6c41377b66407c81016cee4'
         '4eb23a3c7363258bc9ba764d6e5512ba'
         '16b529194c6105c3364127bd8f1efa83'
         'cdcabd475b80afe0534a5621e972736e'
         '01229c3dabbb5fe13348d8c8c31da710'
         'f91e760a251fe1042fa9f2aad68b6b02'
         'fe3c5ef5b30a19c632d7fad0ee58c7c4')

prepare(){
  cd sage-$pkgver

# Parabola-specific patches
# assume all optional packages are installed
  patch -p0 -i ../package.patch
# find L.h header
  sed -e 's|libLfunction|Lfunction|' -i src/sage/libs/lcalc/lcalc_sage.h
# don't try to link against libpng 1.2
  sed -e 's|png12|png|' -i src/module_list.py
# set env variables
  patch -p0 -i ../env.patch
# fix paths in python imports
  patch -p0 -i ../paths.patch
# don't try to remove installed files
  patch -p0 -i ../clean.patch
# skip checking build status
  patch -p0 -i ../skip-check.patch
# supress warning about GAP install dir
  sed -e "s|gapdir = os.path.join(SAGE_LOCAL, 'gap', 'latest')|gapdir = '/usr/lib/gap'|" -i src/sage/libs/gap/util.pyx 
# fix Cremona database detection
  sed -e "s|is_package_installed('database_cremona_ellcurve')|os.path.exists('/usr/share/sage/cremona/cremona.db')|" \
   -i src/sage/databases/cremona.py
# find bliss headers
  sed -e 's|graph.hh|bliss/graph.hh|' -i src/sage/graphs/bliss.pyx
# don't list optional packages when running tests
  patch -p0 -i ../test-optional.patch

# Upstream patches  
# fix build against libfes 0.2 http://trac.sagemath.org/ticket/15209
#  patch -p0 -i ../fes02.patch
# disable fes module, fails to compile
  patch -p0 -i ../disable-fes.patch
# port to pari-sage 2.8.1813
  patch -p1 -i ../pari-sage-2.8.1813.patch
# install jupyter kernel
  patch -p1 -i ../relative-links.patch
  patch -p1 -i ../jupyter-kernel.patch
# set jupyter path
  patch -p0 -i ../jupyter-path.patch

# use python2
  sed -e 's|#!/usr/bin/env python|#!/usr/bin/env python2|' -e 's|exec python|exec python2|' -i src/bin/*
  sed -e 's|cython %s %s|cython2 %s %s|' -e 's|python setup.py|python2 setup.py|' -i src/sage/misc/cython.py
  sed -e 's|exec ipython|exec ipython2|' -e 's|cygdb|cygdb2|' -i src/bin/sage
  sed -e "s|'cython'|'cython2'|" -i src/bin/sage-cython
  sed -e 's|python -c|python2 -c|' -i src/Makefile

# copy required private PARI header
  mkdir -p src/pari
  cp "$srcdir"/anal.h src/pari/anal.h

# remove developer interface
  rm -r src/sage/dev

  cd "$srcdir"/pexpect-2.0
# fix env in pexpect
  patch -p1 -i ../pexpect-env.patch
# hide exceptions in pexpect
  patch -p1 -i ../pexpect-del.patch
}


build() {
  cd sage-$pkgver/src

  export SAGE_LOCAL="/usr"
  export SAGE_SRC="$PWD"
  export CC=gcc

  make sage/libs/pari/auto_gen.pxi
  make sage/ext/interpreters/__init__.py

  python2 setup.py build

# build pexpect
  pushd "$srcdir"/pexpect-2.0
    python2 setup.py build
  popd
}

package() {
  cd sage-$pkgver/src

  export SAGE_ROOT="/usr"
  export SAGE_LOCAL="$SAGE_ROOT"
  export SAGE_SRC="$PWD"
  export CC=gcc
  export JUPYTER_PATH="$pkgdir"/usr/share/jupyter

  python2 setup.py install --root="$pkgdir" --optimize=1 --skip-build

  mkdir -p "$pkgdir"/usr/bin
  cp bin/sage "$pkgdir"/usr/bin
  for _i in arch-env banner cachegrind callgrind cleaner coverage coverageall CSI CSI-helper.py cython env eval grep grepdoc inline-fortran ipython \
    massif maxima.lisp native-execute notebook num-threads.py omega open preparse python rst2sws rst2txt run run-cython runtests startuptime.py \
    sws2rst valgrind version.sh
  do
    cp bin/sage-$_i "$pkgdir"/usr/bin
  done
  cp bin/math-readline "$pkgdir"/usr/bin
  
  mkdir -p "$pkgdir"/usr/share/sage
  cp -r ext "$pkgdir"/usr/share/sage
  
# Create SAGE_SRC, needed for the notebook
  mkdir "$pkgdir"/usr/share/sage/source

# Install Sage's own pexpect
  cd "$srcdir"/pexpect-2.0
  python2 setup.py install --root="$pkgdir" --optimize=1
  mkdir -p "$pkgdir"/usr/lib/sage/site-packages/
  mv "$pkgdir"/usr/lib/python2.7/site-packages/pexpect* "$pkgdir"/usr/lib/sage/site-packages/
}