sagemath-6.9-2.parabola1: updating version

* switch to atlas-lapack
* add python2-igraph dependency
* move lrs to depends

1 files changed, 12 insertions, 21 deletions

diff --git a/libre/sagemath/PKGBUILD b/libre/sagemath/PKGBUILD
index b6f87e544..ce369c9e8 100644
--- a/libre/sagemath/PKGBUILD
+++ b/libre/sagemath/PKGBUILD
@@ -1,4 +1,4 @@
-# $Id: PKGBUILD 143700 2015-10-11 19:15:19Z arojas $
+# $Id: PKGBUILD 143765 2015-10-12 11:53:35Z arojas $
 # Maintainer (Arch): Evgeniy Alekseev <arcanis.arch at gmail dot com>
 # Maintainer (Arch): Antonio Rojas <arojas@archlinux.org>
 # Contributor (Arch): Daniel Wallace <danielwallace at gtmanfred dot com>
@@ -10,22 +10,21 @@
 # Maintainer: André Silva <emulatorman@parabola.nu>
 
 pkgname=sagemath
-pkgver=6.8
-pkgrel=5.parabola1
+pkgver=6.9
+pkgrel=2.parabola1
 pkgdesc="Free Mathematics Software, free software replacement of Magma, Maple, Mathematica, and Matlab, without nonfree nauty recommendation"
 arch=(i686 x86_64)
 url="http://www.sagemath.org"
 license=(GPL)
-depends=(ipython2 ppl mpfi palp polybori singular libcliquer maxima-ecl gfan sympow tachyon python2-rpy2
-  python2-matplotlib python2-scipy python2-sympy python2-networkx libgap gap flintqs lcalc lrcalc
+depends=(ipython2 atlas-lapack ppl mpfi palp brial singular libcliquer maxima-ecl gfan sympow tachyon python2-rpy2
+  python2-matplotlib python2-scipy python2-sympy python2-networkx python2-igraph libgap gap flintqs lcalc lrcalc lrs
   eclib gmp-ecm zn_poly gd python2-cvxopt pynac linbox gsl rubiks pari-galdata pari-seadata-small planarity rankwidth
   sage-data-combinatorial_designs sage-data-elliptic_curves sage-data-graphs sage-data-polytopes_db sage-data-conway_polynomials)
 optdepends=('cython2: to compile cython code' 'jmol: 3D plots' 'sage-notebook: Browser-based (flask) notebook interface'
   'sagemath-doc: Documentation and inline help' 'ipython2-notebook: Jupyter notebook interface' 'mathjax: Jupyter notebook interface'
   'coin-or-cbc: COIN backend for numerical computations'
   'buckygen: for generating fullerene graphs' 'plantri: for generating some classes of graphs' 'benzene: for generating fusenes and benzenoids'
-  'modular_decomposition: modular decomposition of graphs'
-  'lrs: Algorithms for linear reverse search used in game theory and for computing volume of polytopes' 'imagemagick: to show animations'
+  'modular_decomposition: modular decomposition of graphs' 'ffmpeg: to export animations to video' 'imagemagick: to show animations'
   'coxeter3: Coxeter groups implementation' 'cryptominisat: SAT solver' 'arb: floating-point ball arithmetic')
 makedepends=(cython2 boost ratpoints symmetrica fflas-ffpack python2-jinja coin-or-cbc
   mcqd coxeter3 cryptominisat arb modular_decomposition bliss-graphs) # libfes
@@ -36,21 +35,19 @@ source=("$pkgname-$pkgver.tar.gz::https://github.com/sagemath/sage/archive/$pkgv
 # "http://www.sagemath.org/packages/upstream/pexpect/pexpect-2.0.tar.bz2" 
 "http://mirrors.mit.edu/sage/spkg/upstream/pexpect/pexpect-2.0.tar.bz2" 'kernel.json'
 'anal.h' 'package.patch' 'env.patch' 'paths.patch' 'clean.patch' 'skip-check.patch' 
-'pexpect-env.patch' 'pexpect-del.patch' 'disable-fes.patch' 'cython-0.23.patch' 'ipython-4.patch')
-md5sums=('943780ef4460e38f28fefe95e3138981'
+'pexpect-env.patch' 'pexpect-del.patch' 'disable-fes.patch')
+md5sums=('847ad447eaef17b2bc81bb4fae69c190'
          'd9a3e113ed147dcee8f89962a8dccd43'
          '4cee4f96bcd877587e7efc40c20adba7'
          'a906a180d198186a39820b0a2f9a9c63'
-         'f72e544032b1a3f952b7ddafc3a49d63'
-         '843a6cc3b17a1850604593813321418e'
+         '9ba81f717ffd4e20b8b2f2a318307488'
+         '5ebdb6e6ac541f040a39f8d3fd9c8ee1'
          'fd8e3e07f5b7318e6a7200a3c64f5bc2'
          '23e972753be1e5d0f761a7f82a95cebf'
          '5947a420a0b1483f0cbc74c76895789b'
          'a83a3b1bc7fcb7cbf752a83a8311fc42'
          'f333939ea6c41377b66407c81016cee4'
-         '4eb23a3c7363258bc9ba764d6e5512ba'
-         '1b8dfa047115180aa0afbeaf19d97762'
-         '41aa997ad9f00afdc3357b37fc70f0e6')
+         '4eb23a3c7363258bc9ba764d6e5512ba')
 
 prepare(){
   cd sage-$pkgver
@@ -66,8 +63,6 @@ prepare(){
   patch -p0 -i ../env.patch
 # fix paths in python imports
   patch -p0 -i ../paths.patch
-# fix cython linking
-  sed -e "s| atlas(),||" -i src/sage/misc/cython.py
 # don't try to remove installed files
   patch -p0 -i ../clean.patch
 # skip checking build status
@@ -81,16 +76,12 @@ prepare(){
   sed -e 's|graph.hh|bliss/graph.hh|' -i src/sage/graphs/bliss.pyx
 # fix opening docs from Jupyter notebook
   sed -e "s|SageKernelSpec.identifier()|'SageMath'|g" -i src/sage/repl/ipython_kernel/kernel.py
-# fix IPython 4 compatibility
-  patch -p0 -i ../ipython-4.patch
 
 # Upstream patches  
 # fix build against libfes 0.2 http://trac.sagemath.org/ticket/15209
 #  patch -p0 -i "$srcdir"/fes02.patch
 # disable fes module, fails to compile
   patch -p0 -i ../disable-fes.patch
-# fix build with cython 0.23
-  patch -p1 -i "$srcdir"/cython-0.23.patch
 
 # use python2
   sed -e 's|#!/usr/bin/env python|#!/usr/bin/env python2|' -e 's|exec python|exec python2|' -i src/bin/*
@@ -139,7 +130,7 @@ package() {
   export SAGE_LOCAL="$SAGE_ROOT"
   export SAGE_SRC="$PWD"
 
-  python2 setup.py install --root="$pkgdir" --optimize=1
+  python2 setup.py install --root="$pkgdir" --optimize=1 --skip-build
 
   mkdir -p "$pkgdir"/usr/bin
   cp bin/sage "$pkgdir"/usr/bin