blob: ce369c9e814c7dc01f0c4ceedbd75da51d55f4ac (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
|
# $Id: PKGBUILD 143765 2015-10-12 11:53:35Z arojas $
# Maintainer (Arch): Evgeniy Alekseev <arcanis.arch at gmail dot com>
# Maintainer (Arch): Antonio Rojas <arojas@archlinux.org>
# Contributor (Arch): Daniel Wallace <danielwallace at gtmanfred dot com>
# Contributor (Arch): Thomas Dziedzic <gostrc at gmail dot com>
# Contributor (Arch): Osman Ugus <ugus11 at yahoo dot com>
# Contributor (Arch): Stefan Husmann <stefan-husmann at t-online dot de>
# Special thanks to Nareto for moving the compile from the .install to the PKGBUILD
# Maintainer: Omar Vega Ramos <ovruni@gnu.org.pe>
# Maintainer: André Silva <emulatorman@parabola.nu>
pkgname=sagemath
pkgver=6.9
pkgrel=2.parabola1
pkgdesc="Free Mathematics Software, free software replacement of Magma, Maple, Mathematica, and Matlab, without nonfree nauty recommendation"
arch=(i686 x86_64)
url="http://www.sagemath.org"
license=(GPL)
depends=(ipython2 atlas-lapack ppl mpfi palp brial singular libcliquer maxima-ecl gfan sympow tachyon python2-rpy2
python2-matplotlib python2-scipy python2-sympy python2-networkx python2-igraph libgap gap flintqs lcalc lrcalc lrs
eclib gmp-ecm zn_poly gd python2-cvxopt pynac linbox gsl rubiks pari-galdata pari-seadata-small planarity rankwidth
sage-data-combinatorial_designs sage-data-elliptic_curves sage-data-graphs sage-data-polytopes_db sage-data-conway_polynomials)
optdepends=('cython2: to compile cython code' 'jmol: 3D plots' 'sage-notebook: Browser-based (flask) notebook interface'
'sagemath-doc: Documentation and inline help' 'ipython2-notebook: Jupyter notebook interface' 'mathjax: Jupyter notebook interface'
'coin-or-cbc: COIN backend for numerical computations'
'buckygen: for generating fullerene graphs' 'plantri: for generating some classes of graphs' 'benzene: for generating fusenes and benzenoids'
'modular_decomposition: modular decomposition of graphs' 'ffmpeg: to export animations to video' 'imagemagick: to show animations'
'coxeter3: Coxeter groups implementation' 'cryptominisat: SAT solver' 'arb: floating-point ball arithmetic')
makedepends=(cython2 boost ratpoints symmetrica fflas-ffpack python2-jinja coin-or-cbc
mcqd coxeter3 cryptominisat arb modular_decomposition bliss-graphs) # libfes
conflicts=(sage-mathematics)
replaces=(sage-mathematics)
provides=(sage-mathematics)
source=("$pkgname-$pkgver.tar.gz::https://github.com/sagemath/sage/archive/$pkgver.tar.gz"
# "http://www.sagemath.org/packages/upstream/pexpect/pexpect-2.0.tar.bz2"
"http://mirrors.mit.edu/sage/spkg/upstream/pexpect/pexpect-2.0.tar.bz2" 'kernel.json'
'anal.h' 'package.patch' 'env.patch' 'paths.patch' 'clean.patch' 'skip-check.patch'
'pexpect-env.patch' 'pexpect-del.patch' 'disable-fes.patch')
md5sums=('847ad447eaef17b2bc81bb4fae69c190'
'd9a3e113ed147dcee8f89962a8dccd43'
'4cee4f96bcd877587e7efc40c20adba7'
'a906a180d198186a39820b0a2f9a9c63'
'9ba81f717ffd4e20b8b2f2a318307488'
'5ebdb6e6ac541f040a39f8d3fd9c8ee1'
'fd8e3e07f5b7318e6a7200a3c64f5bc2'
'23e972753be1e5d0f761a7f82a95cebf'
'5947a420a0b1483f0cbc74c76895789b'
'a83a3b1bc7fcb7cbf752a83a8311fc42'
'f333939ea6c41377b66407c81016cee4'
'4eb23a3c7363258bc9ba764d6e5512ba')
prepare(){
cd sage-$pkgver
# Parabola-specific patches
# assume all optional packages are installed
patch -p0 -i ../package.patch
# find L.h header
sed -e 's|libLfunction|Lfunction|' -i src/sage/libs/lcalc/lcalc_sage.h
# don't try to link against libpng 1.2
sed -e 's|png12|png|' -i src/module_list.py
# set env variables
patch -p0 -i ../env.patch
# fix paths in python imports
patch -p0 -i ../paths.patch
# don't try to remove installed files
patch -p0 -i ../clean.patch
# skip checking build status
patch -p0 -i ../skip-check.patch
# supress warning about GAP install dir
sed -e "s|gapdir = os.path.join(SAGE_LOCAL, 'gap', 'latest')|gapdir = '/usr/lib/gap'|" -i src/sage/libs/gap/util.pyx
# fix Cremona database detection
sed -e "s|is_package_installed('database_cremona_ellcurve')|os.path.exists('/usr/share/sage/cremona/cremona.db')|" \
-i src/sage/databases/cremona.py
# find bliss headers
sed -e 's|graph.hh|bliss/graph.hh|' -i src/sage/graphs/bliss.pyx
# fix opening docs from Jupyter notebook
sed -e "s|SageKernelSpec.identifier()|'SageMath'|g" -i src/sage/repl/ipython_kernel/kernel.py
# Upstream patches
# fix build against libfes 0.2 http://trac.sagemath.org/ticket/15209
# patch -p0 -i "$srcdir"/fes02.patch
# disable fes module, fails to compile
patch -p0 -i ../disable-fes.patch
# use python2
sed -e 's|#!/usr/bin/env python|#!/usr/bin/env python2|' -e 's|exec python|exec python2|' -i src/bin/*
sed -e 's|cython %s %s|cython2 %s %s|' -e 's|python setup.py|python2 setup.py|' -i src/sage/misc/cython.py
sed -e 's|exec ipython|exec ipython2|' -e 's|cygdb|cygdb2|' -i src/bin/sage
sed -e "s|'cython'|'cython2'|" -i src/bin/sage-cython
sed -e 's|python -c|python2 -c|' -i src/Makefile
# copy required private PARI header
mkdir -p src/pari
cp "$srcdir"/anal.h src/pari/anal.h
# remove developer interface
rm -r src/sage/dev
cd "$srcdir"/pexpect-2.0
# fix env in pexpect
patch -p1 -i ../pexpect-env.patch
# hide exceptions in pexpect
patch -p1 -i ../pexpect-del.patch
}
build() {
cd sage-$pkgver/src
export SAGE_LOCAL="/usr"
export SAGE_SRC="$PWD"
export CC=gcc
make sage/libs/pari/auto_gen.pxi
make sage/ext/interpreters/__init__.py
python2 setup.py build
# build pexpect
pushd "$srcdir"/pexpect-2.0
python2 setup.py build
popd
}
package() {
cd sage-$pkgver/src
export SAGE_ROOT="/usr"
export SAGE_LOCAL="$SAGE_ROOT"
export SAGE_SRC="$PWD"
python2 setup.py install --root="$pkgdir" --optimize=1 --skip-build
mkdir -p "$pkgdir"/usr/bin
cp bin/sage "$pkgdir"/usr/bin
for _i in arch-env banner cachegrind callgrind cleaner coverage coverageall CSI CSI-helper.py cython env eval grep grepdoc inline-fortran ipython \
massif maxima.lisp native-execute notebook num-threads.py omega open preparse python rst2sws rst2txt run run-cython runtests startuptime.py \
sws2rst valgrind version.sh
do
cp bin/sage-$_i "$pkgdir"/usr/bin
done
cp bin/math-readline "$pkgdir"/usr/bin
mkdir -p "$pkgdir"/usr/share/sage
cp -r ext "$pkgdir"/usr/share/sage
# Create SAGE_SRC, needed for the notebook
mkdir "$pkgdir"/usr/share/sage/src
# Install Sage's own pexpect
cd "$srcdir"/pexpect-2.0
python2 setup.py install --root="$pkgdir" --optimize=1
mkdir -p "$pkgdir"/usr/lib/sage/site-packages/
mv "$pkgdir"/usr/lib/python2.7/site-packages/pexpect* "$pkgdir"/usr/lib/sage/site-packages/
# Install Jupyter kernel
install -Dm644 "$srcdir"/kernel.json "$pkgdir"/usr/share/jupyter/kernels/sagemath/kernel.json
cd "$pkgdir"/usr/share/jupyter/kernels/sagemath
ln -s /usr/share/doc/sage/output/html/en doc
ln -s /usr/share/sage/ext/notebook-ipython/logo.svg .
ln -s /usr/share/sage/ext/notebook-ipython/logo-64x64.png .
mkdir "$pkgdir"/usr/share/jupyter/nbextensions
ln -s /usr/share/{jsmol,mathjax} "$pkgdir"/usr/share/jupyter/nbextensions
}
|